ID RAD5_YEAST Reviewed; 1169 AA. AC P32849; D6VY34; DT 01-OCT-1993, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-1993, sequence version 1. DT 27-MAR-2024, entry version 206. DE RecName: Full=DNA repair protein RAD5; DE EC=3.6.4.-; DE AltName: Full=Radiation sensitivity protein 5; DE AltName: Full=Revertibility protein 2; GN Name=RAD5; Synonyms=REV2, SNM2; OrderedLocusNames=YLR032W; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION. RX PubMed=1324406; DOI=10.1128/mcb.12.9.3807-3818.1992; RA Johnson R.E., Henderson S.T., Petes T.D., Prakash S., Bankmann M., RA Prakash L.; RT "Saccharomyces cerevisiae RAD5-encoded DNA repair protein contains DNA RT helicase and zinc-binding sequence motifs and affects the stability of RT simple repetitive sequences in the genome."; RL Mol. Cell. Biol. 12:3807-3818(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169871; RA Johnston M., Hillier L.W., Riles L., Albermann K., Andre B., Ansorge W., RA Benes V., Brueckner M., Delius H., Dubois E., Duesterhoeft A., RA Entian K.-D., Floeth M., Goffeau A., Hebling U., Heumann K., RA Heuss-Neitzel D., Hilbert H., Hilger F., Kleine K., Koetter P., Louis E.J., RA Messenguy F., Mewes H.-W., Miosga T., Moestl D., Mueller-Auer S., RA Nentwich U., Obermaier B., Piravandi E., Pohl T.M., Portetelle D., RA Purnelle B., Rechmann S., Rieger M., Rinke M., Rose M., Scharfe M., RA Scherens B., Scholler P., Schwager C., Schwarz S., Underwood A.P., RA Urrestarazu L.A., Vandenbol M., Verhasselt P., Vierendeels F., Voet M., RA Volckaert G., Voss H., Wambutt R., Wedler E., Wedler H., Zimmermann F.K., RA Zollner A., Hani J., Hoheisel J.D.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome XII."; RL Nature 387:87-90(1997). RN [3] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 402-1063. RX PubMed=1394508; DOI=10.1007/bf00317921; RA Ahne F., Baur M., Eckardt-Schupp F.; RT "The REV2 gene of Saccharomyces cerevisiae: cloning and DNA sequence."; RL Curr. Genet. 22:277-282(1992). RN [5] RP CHARACTERIZATION. RX PubMed=7961763; DOI=10.1016/s0021-9258(18)46922-0; RA Johnson R.E., Prakash S., Prakash L.; RT "Yeast DNA repair protein RAD5 that promotes instability of simple RT repetitive sequences is a DNA-dependent ATPase."; RL J. Biol. Chem. 269:28259-28262(1994). RN [6] RP FUNCTION. RX PubMed=9016623; DOI=10.1093/nar/25.4.743; RA Ahne F., Ja B., Eckardt-Schupp F.; RT "The RAD5 gene product is involved in the avoidance of non-homologous end- RT joining of DNA double strand breaks in the yeast Saccharomyces RT cerevisiae."; RL Nucleic Acids Res. 25:743-749(1997). RN [7] RP FUNCTION, SUBCELLULAR LOCATION, MUTAGENESIS OF CYS-914, SUBUNIT, AND RP INTERACTION WITH RAD18 AND UBC13. RX PubMed=10880451; DOI=10.1093/emboj/19.13.3388; RA Ulrich H.D., Jentsch S.; RT "Two RING finger proteins mediate cooperation between ubiquitin-conjugating RT enzymes in DNA repair."; RL EMBO J. 19:3388-3397(2000). RN [8] RP FUNCTION. RX PubMed=10924462; DOI=10.1093/genetics/155.4.1633; RA Xiao W., Chow B.L., Broomfield S., Hanna M.; RT "The Saccharomyces cerevisiae RAD6 group is composed of an error-prone and RT two error-free postreplication repair pathways."; RL Genetics 155:1633-1641(2000). RN [9] RP FUNCTION. RX PubMed=11884624; DOI=10.1128/mcb.22.7.2419-2426.2002; RA Torres-Ramos C.A., Prakash S., Prakash L.; RT "Requirement of RAD5 and MMS2 for postreplication repair of UV-damaged DNA RT in Saccharomyces cerevisiae."; RL Mol. Cell. Biol. 22:2419-2426(2002). RN [10] RP FUNCTION, AND INTERACTION WITH POL30 AND UBC9. RX PubMed=12226657; DOI=10.1038/nature00991; RA Hoege C., Pfander B., Moldovan G.-L., Pyrowolakis G., Jentsch S.; RT "RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin RT and SUMO."; RL Nature 419:135-141(2002). RN [11] RP FUNCTION, SUBUNIT, INTERACTION WITH UBC13, AND MUTAGENESIS OF CYS-914; RP ILE-916; TYR-944 AND ASN-959. RX PubMed=12496280; DOI=10.1074/jbc.m212195200; RA Ulrich H.D.; RT "Protein-protein interactions within an E2-RING finger complex. RT Implications for ubiquitin-dependent DNA damage repair."; RL J. Biol. Chem. 278:7051-7058(2003). RN [12] RP SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS]. RX PubMed=14562095; DOI=10.1038/nature02026; RA Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., RA Weissman J.S., O'Shea E.K.; RT "Global analysis of protein localization in budding yeast."; RL Nature 425:686-691(2003). RN [13] RP LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS]. RX PubMed=14562106; DOI=10.1038/nature02046; RA Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., RA O'Shea E.K., Weissman J.S.; RT "Global analysis of protein expression in yeast."; RL Nature 425:737-741(2003). RN [14] RP FUNCTION, INTERACTION WITH POL30; RAD18 AND UBC13, AND MUTAGENESIS OF RP 538-LYS-THR-539. RX PubMed=16224103; DOI=10.1093/nar/gki902; RA Chen S., Davies A.A., Sagan D., Ulrich H.D.; RT "The RING finger ATPase Rad5p of Saccharomyces cerevisiae contributes to RT DNA double-strand break repair in a ubiquitin-independent manner."; RL Nucleic Acids Res. 33:5878-5886(2005). RN [15] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=18407956; DOI=10.1074/mcp.m700468-mcp200; RA Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; RT "A multidimensional chromatography technology for in-depth phosphoproteome RT analysis."; RL Mol. Cell. Proteomics 7:1389-1396(2008). RN [16] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-20; SER-23; SER-129 AND RP SER-130, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19779198; DOI=10.1126/science.1172867; RA Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.; RT "Global analysis of Cdk1 substrate phosphorylation sites provides insights RT into evolution."; RL Science 325:1682-1686(2009). RN [17] RP ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR RP METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS SPECTROMETRY RP [LARGE SCALE ANALYSIS]. RX PubMed=22814378; DOI=10.1073/pnas.1210303109; RA Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A., RA Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E., RA Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.; RT "N-terminal acetylome analyses and functional insights of the N-terminal RT acetyltransferase NatB."; RL Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012). CC -!- FUNCTION: Probable helicase, member of the UBC2/RAD6 epistasis group. CC Functions with the DNA repair protein RAD18 in error-free CC postreplication DNA repair. Involved in the maintenance of wild-type CC rates of instability of simple repetitive sequences such as poly(GT) CC repeats. Seems to be involved in maintaining a balance which acts in CC favor of error-prone non-homologous joining during DNA double-strand CC breaks repairs. Recruits the UBC13-MMS2 dimer to chromatin for DNA CC repair. {ECO:0000269|PubMed:10880451, ECO:0000269|PubMed:10924462, CC ECO:0000269|PubMed:11884624, ECO:0000269|PubMed:12226657, CC ECO:0000269|PubMed:12496280, ECO:0000269|PubMed:1324406, CC ECO:0000269|PubMed:16224103, ECO:0000269|PubMed:9016623}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; CC Name=Mn(2+); Xref=ChEBI:CHEBI:29035; CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108; CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=525 uM for ATP; CC pH dependence: CC Optimum pH is 7.0. for ATPase activity.; CC -!- SUBUNIT: Homodimer. Interacts with POL30, RAD18, UBC9 and UBC13. CC {ECO:0000269|PubMed:10880451, ECO:0000269|PubMed:12226657, CC ECO:0000269|PubMed:12496280, ECO:0000269|PubMed:16224103}. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Nucleus. CC -!- MISCELLANEOUS: Present with 1520 molecules/cell in log phase SD medium. CC {ECO:0000269|PubMed:14562106}. CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M96644; AAA34951.1; -; Genomic_DNA. DR EMBL; Z73204; CAA97556.1; -; Genomic_DNA. DR EMBL; S46103; AAB23590.1; -; Genomic_DNA. DR EMBL; BK006945; DAA09350.1; -; Genomic_DNA. DR PIR; S64859; S64859. DR RefSeq; NP_013132.1; NM_001181919.1. DR PDB; 5YRQ; X-ray; 2.00 A; A/B/D/E=5-20. DR PDBsum; 5YRQ; -. DR AlphaFoldDB; P32849; -. DR SASBDB; P32849; -. DR SMR; P32849; -. DR BioGRID; 31306; 370. DR DIP; DIP-5830N; -. DR IntAct; P32849; 5. DR MINT; P32849; -. DR STRING; 4932.YLR032W; -. DR iPTMnet; P32849; -. DR MaxQB; P32849; -. DR PaxDb; 4932-YLR032W; -. DR PeptideAtlas; P32849; -. DR EnsemblFungi; YLR032W_mRNA; YLR032W; YLR032W. DR GeneID; 850719; -. DR KEGG; sce:YLR032W; -. DR AGR; SGD:S000004022; -. DR SGD; S000004022; RAD5. DR VEuPathDB; FungiDB:YLR032W; -. DR eggNOG; KOG1001; Eukaryota. DR GeneTree; ENSGT00940000165376; -. DR HOGENOM; CLU_000315_2_5_1; -. DR InParanoid; P32849; -. DR OMA; KVEPWSN; -. DR OrthoDB; 200191at2759; -. DR BioCyc; YEAST:G3O-32191-MONOMER; -. DR BioGRID-ORCS; 850719; 8 hits in 10 CRISPR screens. DR PRO; PR:P32849; -. DR Proteomes; UP000002311; Chromosome XII. DR RNAct; P32849; Protein. DR GO; GO:0000785; C:chromatin; IDA:SGD. DR GO; GO:0000781; C:chromosome, telomeric region; IDA:SGD. DR GO; GO:0005737; C:cytoplasm; HDA:SGD. DR GO; GO:0005634; C:nucleus; HDA:SGD. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IDA:SGD. DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro. DR GO; GO:0000400; F:four-way junction DNA binding; IDA:SGD. DR GO; GO:0009378; F:four-way junction helicase activity; IDA:SGD. DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro. DR GO; GO:0000403; F:Y-form DNA binding; IDA:SGD. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006281; P:DNA repair; IBA:GO_Central. DR GO; GO:0006302; P:double-strand break repair; IMP:SGD. DR GO; GO:0042275; P:error-free postreplication DNA repair; IMP:SGD. DR GO; GO:0070987; P:error-free translesion synthesis; IDA:SGD. DR GO; GO:0042276; P:error-prone translesion synthesis; IDA:SGD. DR GO; GO:0010994; P:free ubiquitin chain polymerization; IDA:SGD. DR GO; GO:0006301; P:postreplication repair; IDA:SGD. DR GO; GO:0000209; P:protein polyubiquitination; IDA:SGD. DR CDD; cd18008; DEXDc_SHPRH-like; 1. DR CDD; cd23131; RING-HC_RAD5; 1. DR CDD; cd18793; SF2_C_SNF; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1. DR Gene3D; 1.20.120.850; SWI2/SNF2 ATPases, N-terminal domain; 1. DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1. DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR014905; HIRAN. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR038718; SNF2-like_sf. DR InterPro; IPR049730; SNF2/RAD54-like_C. DR InterPro; IPR000330; SNF2_N. DR InterPro; IPR018957; Znf_C3HC4_RING-type. DR InterPro; IPR001841; Znf_RING. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR InterPro; IPR017907; Znf_RING_CS. DR PANTHER; PTHR45626:SF22; DNA REPAIR PROTEIN RAD5; 1. DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF08797; HIRAN; 1. DR Pfam; PF00176; SNF2-rel_dom; 1. DR Pfam; PF00097; zf-C3HC4; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SMART; SM00910; HIRAN; 1. DR SMART; SM00184; RING; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2. DR SUPFAM; SSF57850; RING/U-box; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS00518; ZF_RING_1; 1. DR PROSITE; PS50089; ZF_RING_2; 1. PE 1: Evidence at protein level; KW 3D-structure; Acetylation; ATP-binding; Cytoplasm; DNA damage; DNA repair; KW DNA-binding; Helicase; Hydrolase; Metal-binding; Nucleotide-binding; KW Nucleus; Phosphoprotein; Reference proteome; Zinc; Zinc-finger. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0007744|PubMed:22814378" FT CHAIN 2..1169 FT /note="DNA repair protein RAD5" FT /id="PRO_0000056130" FT DOMAIN 519..730 FT /note="Helicase ATP-binding" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT DOMAIN 995..1165 FT /note="Helicase C-terminal" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542" FT ZN_FING 914..961 FT /note="RING-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175" FT REGION 302..327 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 681..684 FT /note="DEGH box" FT BINDING 532..539 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT MOD_RES 2 FT /note="N-acetylserine" FT /evidence="ECO:0007744|PubMed:22814378" FT MOD_RES 20 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 23 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 129 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MOD_RES 130 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:19779198" FT MUTAGEN 538..539 FT /note="KT->AA: Increased sensitivity toward ionizing FT radiation." FT /evidence="ECO:0000269|PubMed:16224103" FT MUTAGEN 914 FT /note="C->S: Abolishes interaction with UBC13." FT /evidence="ECO:0000269|PubMed:10880451, FT ECO:0000269|PubMed:12496280" FT MUTAGEN 916 FT /note="I->A: Abolishes interaction with UBC13." FT /evidence="ECO:0000269|PubMed:12496280" FT MUTAGEN 944 FT /note="Y->A: Abolishes interaction with UBC13." FT /evidence="ECO:0000269|PubMed:12496280" FT MUTAGEN 959 FT /note="N->A: Abolishes interaction with UBC13." FT /evidence="ECO:0000269|PubMed:12496280" FT CONFLICT 478 FT /note="Q -> R (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT CONFLICT 635 FT /note="T -> N (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT CONFLICT 846 FT /note="G -> S (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT CONFLICT 898 FT /note="R -> S (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT CONFLICT 973 FT /note="V -> A (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT CONFLICT 1063 FT /note="A -> R (in Ref. 4; AAB23590)" FT /evidence="ECO:0000305" FT STRAND 5..8 FT /evidence="ECO:0007829|PDB:5YRQ" SQ SEQUENCE 1169 AA; 134002 MW; 226B720097433EE2 CRC64; MSHIEQEERK RFFNDDLDTS ETSLNFKSEN KESFLFANSH NDDDDDVVVS VSDTTEGEGD RSIVPVRREI EEEGQNQFIT ELLRIIPEMP KDLVMELNEK FGSQEEGLSL ALSHYFDHNS GTSISKIPSS PNQLNTLSDT SNSTLSPSSF HPKRRRIYGF RNQTRLEDKV TWKRFIGALQ VTGMATRPTV RPLKYGSQMK LKRSSEEISA TKVYDSRGRK KASMASLVRI FDIQYDREIG RVSEDIAQIL YPLLSSHEIS FEVTLIFCDN KRLSIGDSFI LQLDCFLTSL IFEERNDGES LMKRRRTEGG NKREKDNGNF GRTLTETDEE LESRSKRLAL LKLFDKLRLK PILDEQKALE KHKIELNSDP EIIDLDNDEI CSNQVTEVHN NLRDTQHEEE TMNLNQLKTF YKAAQSSESL KSLPETEPSR DVFKLELRNY QKQGLTWMLR REQEFAKAAS DGEASETGAN MINPLWKQFK WPNDMSWAAQ NLQQDHVNVE DGIFFYANLH SGEFSLAKPI LKTMIKGGIL SDEMGLGKTV AAYSLVLSCP HDSDVVDKKL FDIENTAVSD NLPSTWQDNK KPYASKTTLI VVPMSLLTQW SNEFTKANNS PDMYHEVYYG GNVSSLKTLL TKTKTPPTVV LTTYGIVQNE WTKHSKGRMT DEDVNISSGL FSVNFYRIII DEGHNIRNRT TVTSKAVMAL QGKCKWVLTG TPIINRLDDL YSLVKFLELD PWRQINYWKT FVSTPFESKN YKQAFDVVNA ILEPVLLRRT KQMKDKDGKP LVELPPKEVV IKRLPFSKSQ DLLYKFLLDK AEVSVKSGIA RGDLLKKYST ILVHILRLRQ VCCHPGLIGS QDENDEDLSK NNKLVTEQTV ELDSLMRVVS ERFDNSFSKE ELDAMIQRLK VKYPDNKSFQ SLECSICTTE PMDLDKALFT ECGHSFCEKC LFEYIEFQNS KNLGLKCPNC RNQIDACRLL ALVQTNSNSK NLEFKPYSPA SKSSKITALL KELQLLQDSS AGEQVVIFSQ FSTYLDILEK ELTHTFSKDV AKIYKFDGRL SLKERTSVLA DFAVKDYSRQ KILLLSLKAG GVGLNLTCAS HAYMMDPWWS PSMEDQAIDR LHRIGQTNSV KVMRFIIQDS IEEKMLRIQE KKRTIGEAMD TDEDERRKRR IEEIQMLFE //