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Protein

D-allose transport system permease protein AlsC

Gene

alsC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system AlsBAC for D-allose; probably responsible for the translocation of the substrate across the membrane.1 Publication

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:YJCV-MONOMER.
ECOL316407:JW4047-MONOMER.
MetaCyc:YJCV-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
D-allose transport system permease protein AlsC
Gene namesi
Name:alsC
Synonyms:yjcV
Ordered Locus Names:b4086, JW4047
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11958. alsC.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 18CytoplasmicSequence analysisAdd BLAST18
Transmembranei19 – 39HelicalSequence analysisAdd BLAST21
Topological domaini40 – 70PeriplasmicSequence analysisAdd BLAST31
Transmembranei71 – 91HelicalSequence analysisAdd BLAST21
Topological domaini92 – 101CytoplasmicSequence analysis10
Transmembranei102 – 122HelicalSequence analysisAdd BLAST21
Topological domaini123 – 124PeriplasmicSequence analysis2
Transmembranei125 – 145HelicalSequence analysisAdd BLAST21
Topological domaini146 – 149CytoplasmicSequence analysis4
Transmembranei150 – 170HelicalSequence analysisAdd BLAST21
Topological domaini171 – 172PeriplasmicSequence analysis2
Transmembranei173 – 193HelicalSequence analysisAdd BLAST21
Topological domaini194 – 221CytoplasmicSequence analysisAdd BLAST28
Transmembranei222 – 242HelicalSequence analysisAdd BLAST21
Topological domaini243 – 252PeriplasmicSequence analysis10
Transmembranei253 – 273HelicalSequence analysisAdd BLAST21
Topological domaini274 – 278CytoplasmicSequence analysis5
Transmembranei279 – 299HelicalSequence analysisAdd BLAST21
Transmembranei300 – 320HelicalSequence analysisAdd BLAST21
Topological domaini321 – 326CytoplasmicSequence analysis6

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000599421 – 326D-allose transport system permease protein AlsCAdd BLAST326

Proteomic databases

PaxDbiP32720.
PRIDEiP32720.

Interactioni

Protein-protein interaction databases

BioGridi4262680. 9 interactors.
STRINGi511145.b4086.

Structurei

3D structure databases

ProteinModelPortaliP32720.
SMRiP32720.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CNN. Bacteria.
COG1172. LUCA.
HOGENOMiHOG000212232.
InParanoidiP32720.
KOiK10550.
OMAiIWIVFET.
PhylomeDBiP32720.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P32720-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGFTTRVKSE ASEKKPFNFA LFWDKYGTFF ILAIIVAIFG SLSPEYFLTT
60 70 80 90 100
NNITQIFVQS SVTVLIGMGE FFAILVAGID LSVGAILALS GMVTAKLMLA
110 120 130 140 150
GVDPFLAAMI GGVLVGGALG AINGCLVNWT GLHPFIITLG TNAIFRGITL
160 170 180 190 200
VISDANSVYG FSFDFVNFFA ASVIGIPVPV IFSLIVALIL WFLTTRMRLG
210 220 230 240 250
RNIYALGGNK NSAFYSGIDV KFHILVVFII SGVCAGLAGV VSTARLGAAE
260 270 280 290 300
PLAGMGFETY AIASAIIGGT SFFGGKGRIF SVVIGGLIIG TINNGLNILQ
310 320
VQTYYQLVVM GGLIIAAVAL DRLISK
Length:326
Mass (Da):34,316
Last modified:October 1, 1993 - v1
Checksum:i996443B50BF9CF0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43180.1.
U14003 Genomic DNA. Translation: AAA96985.1.
U00096 Genomic DNA. Translation: AAC77047.1.
AP009048 Genomic DNA. Translation: BAE78089.1.
PIRiE65217.
RefSeqiNP_418510.1. NC_000913.3.
WP_000507106.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77047; AAC77047; b4086.
BAE78089; BAE78089; BAE78089.
GeneIDi948594.
KEGGiecj:JW4047.
eco:b4086.
PATRICi32123727. VBIEscCol129921_4212.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43180.1.
U14003 Genomic DNA. Translation: AAA96985.1.
U00096 Genomic DNA. Translation: AAC77047.1.
AP009048 Genomic DNA. Translation: BAE78089.1.
PIRiE65217.
RefSeqiNP_418510.1. NC_000913.3.
WP_000507106.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP32720.
SMRiP32720.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262680. 9 interactors.
STRINGi511145.b4086.

Protein family/group databases

TCDBi3.A.1.2.6. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP32720.
PRIDEiP32720.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77047; AAC77047; b4086.
BAE78089; BAE78089; BAE78089.
GeneIDi948594.
KEGGiecj:JW4047.
eco:b4086.
PATRICi32123727. VBIEscCol129921_4212.

Organism-specific databases

EchoBASEiEB1901.
EcoGeneiEG11958. alsC.

Phylogenomic databases

eggNOGiENOG4105CNN. Bacteria.
COG1172. LUCA.
HOGENOMiHOG000212232.
InParanoidiP32720.
KOiK10550.
OMAiIWIVFET.
PhylomeDBiP32720.

Enzyme and pathway databases

BioCyciEcoCyc:YJCV-MONOMER.
ECOL316407:JW4047-MONOMER.
MetaCyc:YJCV-MONOMER.

Miscellaneous databases

PROiP32720.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiALSC_ECOLI
AccessioniPrimary (citable) accession number: P32720
Secondary accession number(s): Q2M6L7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: October 1, 1993
Last modified: November 2, 2016
This is version 129 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.