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Protein

Protein YiiM

Gene

yiiM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • response to toxic substance Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YiiM
Gene namesi
Name:yiiM
Ordered Locus Names:b3910, JW5559
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11870. yiiM.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001696881 – 224Protein YiiMAdd BLAST224

Proteomic databases

PaxDbiP32157.
PRIDEiP32157.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi4262643. 11 interactors.
DIPiDIP-12512N.
IntActiP32157. 3 interactors.
STRINGi511145.b3910.

Structurei

Secondary structure

1224
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi6 – 9Combined sources4
Beta strandi26 – 28Combined sources3
Beta strandi30 – 35Combined sources6
Helixi52 – 55Combined sources4
Beta strandi56 – 61Combined sources6
Helixi63 – 71Combined sources9
Helixi73 – 78Combined sources6
Turni81 – 84Combined sources4
Beta strandi87 – 92Combined sources6
Turni95 – 97Combined sources3
Beta strandi103 – 106Combined sources4
Beta strandi109 – 116Combined sources8
Helixi122 – 126Combined sources5
Helixi132 – 139Combined sources8
Beta strandi144 – 150Combined sources7
Beta strandi152 – 155Combined sources4
Beta strandi160 – 164Combined sources5
Helixi171 – 179Combined sources9
Helixi185 – 192Combined sources8
Helixi199 – 211Combined sources13
Helixi218 – 222Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1O65X-ray2.33A/B/C1-224[»]
1O67X-ray2.54A/B/C1-224[»]
ProteinModelPortaliP32157.
SMRiP32157.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP32157.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini26 – 163MOSCPROSITE-ProRule annotationAdd BLAST138

Sequence similaritiesi

Contains 1 MOSC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108RPX. Bacteria.
COG2258. LUCA.
HOGENOMiHOG000051122.
InParanoidiP32157.
OMAiHMPFDDE.
PhylomeDBiP32157.

Family and domain databases

Gene3Di2.40.33.20. 1 hit.
InterProiIPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 1 hit.
PROSITEiPS51340. MOSC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P32157-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH
60 70 80 90 100
GGPDRALCHY PREHYLYWAR EFPEQAELFV APAFGENLST DGLTESNVYM
110 120 130 140 150
GDIFRWGEAL IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA
160 170 180 190 200
PGKVSADAPL ELVSRVSDVT VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS
210 220
WTRTMQKRRL SGKIEDFSRR LWGK
Length:224
Mass (Da):25,343
Last modified:July 11, 2001 - v2
Checksum:iD9691FB9357F0E38
GO

Sequence cautioni

The sequence AAB03043 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2.
AP009048 Genomic DNA. Translation: BAE77399.1.
PIRiS40854.
RefSeqiNP_418346.2. NC_000913.3.
WP_001270260.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76892; AAC76892; b3910.
BAE77399; BAE77399; BAE77399.
GeneIDi948406.
KEGGiecj:JW5559.
eco:b3910.
PATRICi32123333. VBIEscCol129921_4027.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2.
AP009048 Genomic DNA. Translation: BAE77399.1.
PIRiS40854.
RefSeqiNP_418346.2. NC_000913.3.
WP_001270260.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1O65X-ray2.33A/B/C1-224[»]
1O67X-ray2.54A/B/C1-224[»]
ProteinModelPortaliP32157.
SMRiP32157.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262643. 11 interactors.
DIPiDIP-12512N.
IntActiP32157. 3 interactors.
STRINGi511145.b3910.

Proteomic databases

PaxDbiP32157.
PRIDEiP32157.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76892; AAC76892; b3910.
BAE77399; BAE77399; BAE77399.
GeneIDi948406.
KEGGiecj:JW5559.
eco:b3910.
PATRICi32123333. VBIEscCol129921_4027.

Organism-specific databases

EchoBASEiEB1816.
EcoGeneiEG11870. yiiM.

Phylogenomic databases

eggNOGiENOG4108RPX. Bacteria.
COG2258. LUCA.
HOGENOMiHOG000051122.
InParanoidiP32157.
OMAiHMPFDDE.
PhylomeDBiP32157.

Enzyme and pathway databases

BioCyciEcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP32157.
PROiP32157.

Family and domain databases

Gene3Di2.40.33.20. 1 hit.
InterProiIPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 1 hit.
PROSITEiPS51340. MOSC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIIM_ECOLI
AccessioniPrimary (citable) accession number: P32157
Secondary accession number(s): Q2M8K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: July 11, 2001
Last modified: November 2, 2016
This is version 123 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.