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Protein

Protein YiiM

Gene

yiiM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • response to toxic substance Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YiiM
Gene namesi
Name:yiiM
Ordered Locus Names:b3910, JW5559
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11870. yiiM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 224224Protein YiiMPRO_0000169688Add
BLAST

Proteomic databases

PaxDbiP32157.
PRIDEiP32157.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

DIPiDIP-12512N.
IntActiP32157. 3 interactions.
STRINGi511145.b3910.

Structurei

Secondary structure

1
224
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 94Combined sources
Beta strandi26 – 283Combined sources
Beta strandi30 – 356Combined sources
Helixi52 – 554Combined sources
Beta strandi56 – 616Combined sources
Helixi63 – 719Combined sources
Helixi73 – 786Combined sources
Turni81 – 844Combined sources
Beta strandi87 – 926Combined sources
Turni95 – 973Combined sources
Beta strandi103 – 1064Combined sources
Beta strandi109 – 1168Combined sources
Helixi122 – 1265Combined sources
Helixi132 – 1398Combined sources
Beta strandi144 – 1507Combined sources
Beta strandi152 – 1554Combined sources
Beta strandi160 – 1645Combined sources
Helixi171 – 1799Combined sources
Helixi185 – 1928Combined sources
Helixi199 – 21113Combined sources
Helixi218 – 2225Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1O65X-ray2.33A/B/C1-224[»]
1O67X-ray2.54A/B/C1-224[»]
ProteinModelPortaliP32157.
SMRiP32157. Positions 1-223.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP32157.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 163138MOSCPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 MOSC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG2258.
HOGENOMiHOG000051122.
InParanoidiP32157.
OMAiHMPFDDE.
OrthoDBiEOG6P5ZHM.
PhylomeDBiP32157.

Family and domain databases

Gene3Di2.40.33.20. 1 hit.
InterProiIPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 1 hit.
PROSITEiPS51340. MOSC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P32157-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH
60 70 80 90 100
GGPDRALCHY PREHYLYWAR EFPEQAELFV APAFGENLST DGLTESNVYM
110 120 130 140 150
GDIFRWGEAL IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA
160 170 180 190 200
PGKVSADAPL ELVSRVSDVT VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS
210 220
WTRTMQKRRL SGKIEDFSRR LWGK
Length:224
Mass (Da):25,343
Last modified:July 11, 2001 - v2
Checksum:iD9691FB9357F0E38
GO

Sequence cautioni

The sequence AAB03043.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2.
AP009048 Genomic DNA. Translation: BAE77399.1.
PIRiS40854.
RefSeqiNP_418346.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC76892; AAC76892; b3910.
BAE77399; BAE77399; BAE77399.
GeneIDi948406.
KEGGiecj:Y75_p3276.
eco:b3910.
PATRICi32123333. VBIEscCol129921_4027.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2.
AP009048 Genomic DNA. Translation: BAE77399.1.
PIRiS40854.
RefSeqiNP_418346.2. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1O65X-ray2.33A/B/C1-224[»]
1O67X-ray2.54A/B/C1-224[»]
ProteinModelPortaliP32157.
SMRiP32157. Positions 1-223.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-12512N.
IntActiP32157. 3 interactions.
STRINGi511145.b3910.

Proteomic databases

PaxDbiP32157.
PRIDEiP32157.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76892; AAC76892; b3910.
BAE77399; BAE77399; BAE77399.
GeneIDi948406.
KEGGiecj:Y75_p3276.
eco:b3910.
PATRICi32123333. VBIEscCol129921_4027.

Organism-specific databases

EchoBASEiEB1816.
EcoGeneiEG11870. yiiM.

Phylogenomic databases

eggNOGiCOG2258.
HOGENOMiHOG000051122.
InParanoidiP32157.
OMAiHMPFDDE.
OrthoDBiEOG6P5ZHM.
PhylomeDBiP32157.

Enzyme and pathway databases

BioCyciEcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP32157.
PROiP32157.

Family and domain databases

Gene3Di2.40.33.20. 1 hit.
InterProiIPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 1 hit.
PROSITEiPS51340. MOSC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes."
    Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 21:3391-3398(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Cited for: X-RAY CRYSTALLOGRAPHY (2.33 ANGSTROMS), SUBUNIT.

Entry informationi

Entry nameiYIIM_ECOLI
AccessioniPrimary (citable) accession number: P32157
Secondary accession number(s): Q2M8K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: July 11, 2001
Last modified: June 24, 2015
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.