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P32157

- YIIM_ECOLI

UniProt

P32157 - YIIM_ECOLI

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Protein

Protein YiiM

Gene

yiiM

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. molybdenum ion binding Source: InterPro
  3. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. response to toxic substance Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YiiM
Gene namesi
Name:yiiM
Ordered Locus Names:b3910, JW5559
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11870. yiiM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 224224Protein YiiMPRO_0000169688Add
BLAST

Proteomic databases

PaxDbiP32157.
PRIDEiP32157.

Expressioni

Gene expression databases

GenevestigatoriP32157.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

DIPiDIP-12512N.
IntActiP32157. 3 interactions.
STRINGi511145.b3910.

Structurei

Secondary structure

1
224
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 94
Beta strandi26 – 283
Beta strandi30 – 356
Helixi52 – 554
Beta strandi56 – 616
Helixi63 – 719
Helixi73 – 786
Turni81 – 844
Beta strandi87 – 926
Turni95 – 973
Beta strandi103 – 1064
Beta strandi109 – 1168
Helixi122 – 1265
Helixi132 – 1398
Beta strandi144 – 1507
Beta strandi152 – 1554
Beta strandi160 – 1645
Helixi171 – 1799
Helixi185 – 1928
Helixi199 – 21113
Helixi218 – 2225

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1O65X-ray2.33A/B/C1-224[»]
1O67X-ray2.54A/B/C1-224[»]
ProteinModelPortaliP32157.
SMRiP32157. Positions 1-223.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP32157.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 163138MOSCPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 MOSC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG2258.
HOGENOMiHOG000051122.
InParanoidiP32157.
OMAiHMPFDDE.
OrthoDBiEOG6P5ZHM.
PhylomeDBiP32157.

Family and domain databases

Gene3Di2.40.33.20. 1 hit.
InterProiIPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 1 hit.
PROSITEiPS51340. MOSC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P32157 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRYPVDVYTG KIQAYPEGKP SAIAKIQVDG ELMLTELGLE GDEQAEKKVH
60 70 80 90 100
GGPDRALCHY PREHYLYWAR EFPEQAELFV APAFGENLST DGLTESNVYM
110 120 130 140 150
GDIFRWGEAL IQVSQPRSPC YKLNYHFDIS DIAQLMQNTG KVGWLYSVIA
160 170 180 190 200
PGKVSADAPL ELVSRVSDVT VQEAAAIAWH MPFDDDQYHR LLSAAGLSKS
210 220
WTRTMQKRRL SGKIEDFSRR LWGK
Length:224
Mass (Da):25,343
Last modified:July 11, 2001 - v2
Checksum:iD9691FB9357F0E38
GO

Sequence cautioni

The sequence AAB03043.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2.
AP009048 Genomic DNA. Translation: BAE77399.1.
PIRiS40854.
RefSeqiNP_418346.2. NC_000913.3.
YP_491540.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76892; AAC76892; b3910.
BAE77399; BAE77399; BAE77399.
GeneIDi12933649.
948406.
KEGGiecj:Y75_p3276.
eco:b3910.
PATRICi32123333. VBIEscCol129921_4027.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L19201 Genomic DNA. Translation: AAB03043.1 . Different initiation.
U00096 Genomic DNA. Translation: AAC76892.2 .
AP009048 Genomic DNA. Translation: BAE77399.1 .
PIRi S40854.
RefSeqi NP_418346.2. NC_000913.3.
YP_491540.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1O65 X-ray 2.33 A/B/C 1-224 [» ]
1O67 X-ray 2.54 A/B/C 1-224 [» ]
ProteinModelPortali P32157.
SMRi P32157. Positions 1-223.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-12512N.
IntActi P32157. 3 interactions.
STRINGi 511145.b3910.

Proteomic databases

PaxDbi P32157.
PRIDEi P32157.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC76892 ; AAC76892 ; b3910 .
BAE77399 ; BAE77399 ; BAE77399 .
GeneIDi 12933649.
948406.
KEGGi ecj:Y75_p3276.
eco:b3910.
PATRICi 32123333. VBIEscCol129921_4027.

Organism-specific databases

EchoBASEi EB1816.
EcoGenei EG11870. yiiM.

Phylogenomic databases

eggNOGi COG2258.
HOGENOMi HOG000051122.
InParanoidi P32157.
OMAi HMPFDDE.
OrthoDBi EOG6P5ZHM.
PhylomeDBi P32157.

Enzyme and pathway databases

BioCyci EcoCyc:EG11870-MONOMER.
ECOL316407:JW5559-MONOMER.

Miscellaneous databases

EvolutionaryTracei P32157.
PROi P32157.

Gene expression databases

Genevestigatori P32157.

Family and domain databases

Gene3Di 2.40.33.20. 1 hit.
InterProi IPR005163. 3-alpha_domain.
IPR005302. MoCF_Sase_C.
IPR015808. MoCF_Sase_C-like.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view ]
Pfami PF03475. 3-alpha. 1 hit.
PF03473. MOSC. 1 hit.
[Graphical view ]
SUPFAMi SSF50800. SSF50800. 1 hit.
PROSITEi PS51340. MOSC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes."
    Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 21:3391-3398(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Cited for: X-RAY CRYSTALLOGRAPHY (2.33 ANGSTROMS), SUBUNIT.

Entry informationi

Entry nameiYIIM_ECOLI
AccessioniPrimary (citable) accession number: P32157
Secondary accession number(s): Q2M8K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: July 11, 2001
Last modified: October 29, 2014
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3