Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YihR

Gene

yihR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • carbohydrate metabolic process Source: InterPro
  • single-species biofilm formation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11844-MONOMER.
ECOL316407:JW3850-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YihR
Gene namesi
Name:yihR
Ordered Locus Names:b3879, JW3850
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11844. yihR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 308308Uncharacterized protein YihRPRO_0000169677Add
BLAST

Proteomic databases

PaxDbiP32139.

Expressioni

Inductioni

Induced during growth with sulfoquinovose.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4262637. 6 interactions.
DIPiDIP-12499N.
IntActiP32139. 2 interactions.
MINTiMINT-1315965.
STRINGi511145.b3879.

Structurei

3D structure databases

ProteinModelPortaliP32139.
SMRiP32139. Positions 20-292.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4107WI4. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000241112.
InParanoidiP32139.
KOiK01785.
OMAiNIDLIRP.
OrthoDBiEOG6KWZ10.
PhylomeDBiP32139.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.

Sequencei

Sequence statusi: Complete.

P32139-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLIKVPCMQ ITNMHCSGQT VSLAAGDYHA TIVTVGAGLA ELTFQGCHLV
60 70 80 90 100
IPHKPEEMPL AHLGKVLIPW PNRIANGCYR YQGQEYQLPI NEHSSKAAIH
110 120 130 140 150
GLLAWRDWQI SELTATSVTL TAFLPPSYGY PFMLASQVVY SLNAHTGLSV
160 170 180 190 200
EIASQNIGTV AAPYGVGIHP YLTCNLTSVD EYLFQLPANQ VYAVDEHANP
210 220 230 240 250
TTLHHVDELD LNFTQAKKIA ATKIDHTFKT ANDLWEMTIT HPQQALSVSL
260 270 280 290 300
CSDQLWVQVY SGEKLQRQGL AVEPMSCPPN AFNSGIDLLL LESGKPHRLF

FNIYGQRK
Length:308
Mass (Da):34,010
Last modified:October 1, 1993 - v1
Checksum:iC44697E975FFB039
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03012.1.
U00096 Genomic DNA. Translation: AAC76876.1.
AP009048 Genomic DNA. Translation: BAE77430.1.
PIRiS40823.
RefSeqiNP_418315.3. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC76876; AAC76876; b3879.
BAE77430; BAE77430; BAE77430.
GeneIDi948375.
KEGGiecj:JW3850.
eco:b3879.
PATRICi32123261. VBIEscCol129921_3991.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03012.1.
U00096 Genomic DNA. Translation: AAC76876.1.
AP009048 Genomic DNA. Translation: BAE77430.1.
PIRiS40823.
RefSeqiNP_418315.3. NC_000913.3.

3D structure databases

ProteinModelPortaliP32139.
SMRiP32139. Positions 20-292.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262637. 6 interactions.
DIPiDIP-12499N.
IntActiP32139. 2 interactions.
MINTiMINT-1315965.
STRINGi511145.b3879.

Proteomic databases

PaxDbiP32139.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76876; AAC76876; b3879.
BAE77430; BAE77430; BAE77430.
GeneIDi948375.
KEGGiecj:JW3850.
eco:b3879.
PATRICi32123261. VBIEscCol129921_3991.

Organism-specific databases

EchoBASEiEB1790.
EcoGeneiEG11844. yihR.

Phylogenomic databases

eggNOGiENOG4107WI4. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000241112.
InParanoidiP32139.
KOiK01785.
OMAiNIDLIRP.
OrthoDBiEOG6KWZ10.
PhylomeDBiP32139.

Enzyme and pathway databases

BioCyciEcoCyc:EG11844-MONOMER.
ECOL316407:JW3850-MONOMER.

Miscellaneous databases

PROiP32139.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes."
    Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 21:3391-3398(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle."
    Denger K., Weiss M., Felux A.K., Schneider A., Mayer C., Spiteller D., Huhn T., Cook A.M., Schleheck D.
    Nature 507:114-117(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY, INDUCTION.
    Strain: K12.

Entry informationi

Entry nameiYIHR_ECOLI
AccessioniPrimary (citable) accession number: P32139
Secondary accession number(s): Q2M8H6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: October 1, 1993
Last modified: July 6, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.