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Protein

Uncharacterized protein YihM

Gene

yihM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11839-MONOMER.
ECOL316407:JW3844-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YihM
Gene namesi
Name:yihM
Ordered Locus Names:b3873, JW3844
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11839. yihM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 326326Uncharacterized protein YihMPRO_0000169675Add
BLAST

Proteomic databases

EPDiP32134.
PaxDbiP32134.
PRIDEiP32134.

Interactioni

Protein-protein interaction databases

BioGridi4262633. 7 interactions.
DIPiDIP-12494N.
IntActiP32134. 1 interaction.
MINTiMINT-1289780.
STRINGi511145.b3873.

Structurei

3D structure databases

ProteinModelPortaliP32134.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108KHF. Bacteria.
ENOG410ZVGB. LUCA.
HOGENOMiHOG000009655.
InParanoidiP32134.
OMAiKSHELAM.
OrthoDBiEOG6QCD6R.
PhylomeDBiP32134.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.

Sequencei

Sequence statusi: Complete.

P32134-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTINNARKI LQRVDTLPLY LHAYAFHLNM RLERVLPADL LDIASENNLR
60 70 80 90 100
GVKIHVLDGE RFSLGNMDDK ELSAFGDKAR RLNLDIHIET SASDKASIDE
110 120 130 140 150
AVAIALKTGA SSVRFYPRYE GNLRDVLSII ANDIAYVRET YQDSGLTFTI
160 170 180 190 200
EQHEDLKSHE LVSLVKESEM ESLSLLFDFA NMINANEHPI DALKTMAPHI
210 220 230 240 250
TQVHIKDALI VKEPGGLGHK ACISGQGDMP FKALLTHLIC LGDDEPQVTA
260 270 280 290 300
YGLEEEVDYY APAFRFEDED DNPWIPYRQM SETPLPENHL LDARLRKEKE
310 320
DAINQINHVR NVLQQIKQEA NHLLNH
Length:326
Mass (Da):36,942
Last modified:October 1, 1993 - v1
Checksum:i9DD1AC297136850F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03007.1.
U00096 Genomic DNA. Translation: AAC76870.1.
AP009048 Genomic DNA. Translation: BAE77436.1.
PIRiS40818.
RefSeqiNP_418309.1. NC_000913.3.
WP_000256396.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76870; AAC76870; b3873.
BAE77436; BAE77436; BAE77436.
GeneIDi948367.
KEGGiecj:JW3844.
eco:b3873.
PATRICi32123249. VBIEscCol129921_3985.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19201 Genomic DNA. Translation: AAB03007.1.
U00096 Genomic DNA. Translation: AAC76870.1.
AP009048 Genomic DNA. Translation: BAE77436.1.
PIRiS40818.
RefSeqiNP_418309.1. NC_000913.3.
WP_000256396.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP32134.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262633. 7 interactions.
DIPiDIP-12494N.
IntActiP32134. 1 interaction.
MINTiMINT-1289780.
STRINGi511145.b3873.

Proteomic databases

EPDiP32134.
PaxDbiP32134.
PRIDEiP32134.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76870; AAC76870; b3873.
BAE77436; BAE77436; BAE77436.
GeneIDi948367.
KEGGiecj:JW3844.
eco:b3873.
PATRICi32123249. VBIEscCol129921_3985.

Organism-specific databases

EchoBASEiEB1785.
EcoGeneiEG11839. yihM.

Phylogenomic databases

eggNOGiENOG4108KHF. Bacteria.
ENOG410ZVGB. LUCA.
HOGENOMiHOG000009655.
InParanoidiP32134.
OMAiKSHELAM.
OrthoDBiEOG6QCD6R.
PhylomeDBiP32134.

Enzyme and pathway databases

BioCyciEcoCyc:EG11839-MONOMER.
ECOL316407:JW3844-MONOMER.

Miscellaneous databases

PROiP32134.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes."
    Plunkett G. III, Burland V., Daniels D.L., Blattner F.R.
    Nucleic Acids Res. 21:3391-3398(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYIHM_ECOLI
AccessioniPrimary (citable) accession number: P32134
Secondary accession number(s): Q2M8H0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: October 1, 1993
Last modified: March 16, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.