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Protein

Uncharacterized lipoprotein YdeK

Gene

ydeK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11780-MONOMER.
ECOL316407:JW1503-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YdeK
Alternative name(s):
ORFT
Gene namesi
Name:ydeK
Synonyms:orfT
Ordered Locus Names:b1510, JW1503
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11780. ydeK.

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818PROSITE-ProRule annotationAdd
BLAST
Chaini19 – 13251307Uncharacterized lipoprotein YdeKPRO_0000013845Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi19 – 191N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi19 – 191S-diacylglycerol cysteinePROSITE-ProRule annotation

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PRIDEiP32051.

Interactioni

Protein-protein interaction databases

BioGridi4260223. 321 interactions.
STRINGi316407.85674998.

Structurei

3D structure databases

ProteinModelPortaliP32051.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YfaL.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000009465.
KOiK12678.
OMAiGASDYTW.
PhylomeDBiP32051.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
InterProiIPR013425. Autotrns_rpt.
IPR024973. ESPR.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR030895. T5SS_PEPC_rpt.
[Graphical view]
PfamiPF13018. ESPR. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR02601. autotrns_rpt. 2 hits.
TIGR04393. rpt_T5SS_PEPC. 7 hits.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P32051-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRIYRVIWN CTLQVFQACS ELTRRAGKTS TVNLRKSSGL TTKFSRLTLG
60 70 80 90 100
VLLALSGSAS GASLEVDNDQ ITNIDTDVAY DAYLVGWYGT GVLNILAGGN
110 120 130 140 150
ASLTTITTSV IGANEDSEGT VNVLGGTWRL YDSGNNARPL NVGQSGTGTL
160 170 180 190 200
NIKQKGHVDG GYLRLGSSTG GVGTVNVEGE DSVLTTELFE IGSYGTGSLN
210 220 230 240 250
ITDKGYVTSS IVAILGYQAG SNGQVVVEKG GEWLIKNNDS SIEFQIGNQG
260 270 280 290 300
TGEATIREGG LVTAENTIIG GNATGIGTLN VQDQDSVITV RRLYNGYFGN
310 320 330 340 350
GTVNISNNGL INNKEYSLVG VQDGSHGVVN VTDKGHWNFL GTGEAFRYIY
360 370 380 390 400
IGDAGDGELN VSSEGKVDSG IITAGMKETG TGNITVKDKN SVITNLGTNL
410 420 430 440 450
GYDGHGEMNI SNQGLVVSNG GSSLGYGETG VGNVSITTGG MWEVNKNVYT
460 470 480 490 500
TIGVAGVGNL NISDGGKFVS QNITFLGDKA SGIGTLNLMD ATSSFDTVGI
510 520 530 540 550
NVGNFGSGIV NVSNGATLNS TGYGFIGGNA SGKGIVNIST DSLWNLKTSS
560 570 580 590 600
TNAQLLQVGV LGTGELNITT GGIVKARDTQ IALNDKSKGD VRVDGQNSLL
610 620 630 640 650
ETFNMYVGTS GTGTLTLTNN GTLNVEGGEV YLGVFEPAVG TLNIGAAHGE
660 670 680 690 700
AAADAGFITN ATKVEFGLGE GVFVFNHTNN SDAGYQVDML ITGDDKDGKV
710 720 730 740 750
IHDAGHTVFN AGNTYSGKTL VNDGLLTIAS HTADGVTGMG SSEVTIANPG
760 770 780 790 800
TLDILASTNS AGDYTLTNAL KGDGLMRVQL SSSDKMFGFT HATGTEFAGV
810 820 830 840 850
AQLKDSTFTL ERDNTAALTH AMLQSDSENT TSVKVGEQSI GGLAMNGGTI
860 870 880 890 900
IFDTDIPAAT LAEGYISVDT LVVGAGDYTW KGRNYQVNGT GDVLIDVPKP
910 920 930 940 950
WNDPMANNPL TTLNLLEHDD SHVGVQLVKA QTVIGSGGSL TLRDLQGDEV
960 970 980 990 1000
EADKTLHIAQ NGTVVAEGDY GFRLTTAPGN GLYVNYGLKA LNIHGGQKLT
1010 1020 1030 1040 1050
LAEHGGAYGA TADMSAKIGG EGDLAINTVR QVSLSNGQND YQGATYVQMG
1060 1070 1080 1090 1100
TLRTDADGAL GNTRELNISN AAIVDLNGST QTVETFTGQM GSTVLFKEGA
1110 1120 1130 1140 1150
LTVNKGGISQ GELTGGGNLN VTGGTLAIEG LNARYNALTS ISPNAEVSLD
1160 1170 1180 1190 1200
NTQGLGRGNI ANDGLLTLKN VTGELRNSIS GKGIVSATAR TDVELDGDNS
1210 1220 1230 1240 1250
RFVGQFNIDT GSALSVNEQK NLGDASVINN GLLTISTERS WAMTHSISGS
1260 1270 1280 1290 1300
GDVTKLGTGI LTLNNDSAAY QGTTDIVGGE IAFGSDSAIN MASQHINIHN
1310 1320
SGVMSGNVTT AGDMNVMPGG GTACR
Length:1,325
Mass (Da):136,515
Last modified:November 1, 1997 - v2
Checksum:i26A3A066FA19AD7D
GO

Sequence cautioni

The sequence CAA51730 differs from that shown. Reason: Frameshift at position 653. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti884 – 8841N → K in CAA51730 (PubMed:8274505).Curated
Sequence conflicti1317 – 13171M → S in CAA51730 (PubMed:8274505).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15190.2.
X73295 Genomic DNA. Translation: CAA51730.1. Frameshift.
PIRiA64905.
RefSeqiWP_011443591.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAA15190; BAA15190; BAA15190.
KEGGiecj:JW1503.
PATRICi48662334. VBIEscCol107702_1528.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15190.2.
X73295 Genomic DNA. Translation: CAA51730.1. Frameshift.
PIRiA64905.
RefSeqiWP_011443591.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP32051.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260223. 321 interactions.
STRINGi316407.85674998.

Proteomic databases

PRIDEiP32051.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA15190; BAA15190; BAA15190.
KEGGiecj:JW1503.
PATRICi48662334. VBIEscCol107702_1528.

Organism-specific databases

EchoBASEiEB1728.
EcoGeneiEG11780. ydeK.

Phylogenomic databases

HOGENOMiHOG000009465.
KOiK12678.
OMAiGASDYTW.
PhylomeDBiP32051.

Enzyme and pathway databases

BioCyciEcoCyc:EG11780-MONOMER.
ECOL316407:JW1503-MONOMER.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
InterProiIPR013425. Autotrns_rpt.
IPR024973. ESPR.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR030895. T5SS_PEPC_rpt.
[Graphical view]
PfamiPF13018. ESPR. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR02601. autotrns_rpt. 2 hits.
TIGR04393. rpt_T5SS_PEPC. 7 hits.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDEK_ECOLI
AccessioniPrimary (citable) accession number: P32051
Secondary accession number(s): P76140, P77168
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: November 1, 1997
Last modified: April 13, 2016
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.