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Protein

Phycocyanobilin lyase subunit beta

Gene

cpcF

Organism
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Required for the chromophorylation of the cpcA gene product.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Enzyme and pathway databases

BioCyciSSP32049:GKF7-2215-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phycocyanobilin lyase subunit beta (EC:4.-.-.-)
Alternative name(s):
Phycocyanin operon protein CpcF
Gene namesi
Name:cpcF
Ordered Locus Names:SYNPCC7002_A2214
OrganismiSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
Taxonomic identifieri32049 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus
ProteomesiUP000001688 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Phycobilisome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 205205Phycocyanobilin lyase subunit betaPRO_0000199280Add
BLAST

Interactioni

Subunit structurei

CpcE and CpcF associate to form a lyase.

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A2214.

Structurei

3D structure databases

ProteinModelPortaliP31968.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CpcE/RpcE/PecE family.Curated

Phylogenomic databases

eggNOGiCOG1413.
HOGENOMiHOG000276575.
KOiK02289.
OMAiDYNYGAR.
OrthoDBiEOG67T5M3.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR004155. PBS_lyase_HEAT.
[Graphical view]
PfamiPF03130. HEAT_PBS. 2 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

P31968-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVDVLIRAV NNPTSAQDLV KNVAQLAATK DEQAIPTLVE VLKFNNPGAA
60 70 80 90 100
VAAVNGLINI GEAVVPYLLE NVDGYNYGAR AWMLRIFAGI GDPRALDLLI
110 120 130 140 150
EAANKDFAFS VRRSAAKGLG NIQWHKVPDS EREVQQQKVC DCLFLALEDG
160 170 180 190 200
EWVVRYGAIA GLEGLSQAIP EARKIVIKNK LTEFLTTEPE AAIRARIQKA

ILSLP
Length:205
Mass (Da):22,305
Last modified:July 1, 1993 - v1
Checksum:iA002E8FACB6B60AB
GO

Sequence cautioni

The sequence ACB00195.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M93569 Genomic DNA. Translation: AAA27309.1.
CP000951 Genomic DNA. Translation: ACB00195.1. Different initiation.
RefSeqiWP_041443591.1. NC_010475.1.

Genome annotation databases

EnsemblBacteriaiACB00195; ACB00195; SYNPCC7002_A2214.
KEGGisyp:SYNPCC7002_A2214.
PATRICi23819066. VBISynSp37135_2466.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M93569 Genomic DNA. Translation: AAA27309.1.
CP000951 Genomic DNA. Translation: ACB00195.1. Different initiation.
RefSeqiWP_041443591.1. NC_010475.1.

3D structure databases

ProteinModelPortaliP31968.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi32049.SYNPCC7002_A2214.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB00195; ACB00195; SYNPCC7002_A2214.
KEGGisyp:SYNPCC7002_A2214.
PATRICi23819066. VBISynSp37135_2466.

Phylogenomic databases

eggNOGiCOG1413.
HOGENOMiHOG000276575.
KOiK02289.
OMAiDYNYGAR.
OrthoDBiEOG67T5M3.

Enzyme and pathway databases

BioCyciSSP32049:GKF7-2215-MONOMER.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR004155. PBS_lyase_HEAT.
[Graphical view]
PfamiPF03130. HEAT_PBS. 2 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The cpcE and cpcF genes of Synechococcus sp. PCC 7002. Construction and phenotypic characterization of interposon mutants."
    Zhou J., Gasparich G.E., Stirewalt V.L., de Lorimier R., Bryant D.A.
    J. Biol. Chem. 267:16138-16145(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION.
  2. "Complete sequence of Synechococcus sp. PCC 7002."
    Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
    Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27264 / PCC 7002 / PR-6.
  3. Cited for: CHARACTERIZATION.

Entry informationi

Entry nameiCPCF_SYNP2
AccessioniPrimary (citable) accession number: P31968
Secondary accession number(s): B1XIU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: July 22, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.