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P31968 (CPCF_SYNP2) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phycocyanobilin lyase subunit beta

EC=4.-.-.-
Alternative name(s):
Phycocyanin operon protein CpcF
Gene names
Name:cpcF
Ordered Locus Names:SYNPCC7002_A2214
OrganismSynechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum) [Complete proteome] [HAMAP]
Taxonomic identifier32049 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechococcus

Protein attributes

Sequence length205 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Required for the chromophorylation of the cpcA gene product.

Subunit structure

CpcE and CpcF associate to form a lyase.

Sequence similarities

Belongs to the CpcE/RpcE/PecE family.

Sequence caution

The sequence ACB00195.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Cellular componentPhycobilisome
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componentphycobilisome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionlyase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 205205Phycocyanobilin lyase subunit beta
PRO_0000199280

Sequences

Sequence LengthMass (Da)Tools
P31968 [UniParc].

Last modified July 1, 1993. Version 1.
Checksum: A002E8FACB6B60AB

FASTA20522,305
        10         20         30         40         50         60 
MTVDVLIRAV NNPTSAQDLV KNVAQLAATK DEQAIPTLVE VLKFNNPGAA VAAVNGLINI 

        70         80         90        100        110        120 
GEAVVPYLLE NVDGYNYGAR AWMLRIFAGI GDPRALDLLI EAANKDFAFS VRRSAAKGLG 

       130        140        150        160        170        180 
NIQWHKVPDS EREVQQQKVC DCLFLALEDG EWVVRYGAIA GLEGLSQAIP EARKIVIKNK 

       190        200 
LTEFLTTEPE AAIRARIQKA ILSLP 

« Hide

References

« Hide 'large scale' references
[1]"The cpcE and cpcF genes of Synechococcus sp. PCC 7002. Construction and phenotypic characterization of interposon mutants."
Zhou J., Gasparich G.E., Stirewalt V.L., de Lorimier R., Bryant D.A.
J. Biol. Chem. 267:16138-16145(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION.
[2]"Complete sequence of Synechococcus sp. PCC 7002."
Li T., Zhao J., Zhao C., Liu Z., Zhao F., Marquardt J., Nomura C.T., Persson S., Detter J.C., Richardson P.M., Lanz C., Schuster S.C., Wang J., Li S., Huang X., Cai T., Yu Z., Luo J., Zhao J., Bryant D.A.
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27264 / PCC 7002 / PR-6.
[3]"Phycocyanin alpha-subunit phycocyanobilin lyase."
Fairchild C.D., Zhao J., Zhou J., Colson S.E., Bryant D.A., Glazer A.N.
Proc. Natl. Acad. Sci. U.S.A. 89:7017-7021(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: CHARACTERIZATION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M93569 Genomic DNA. Translation: AAA27309.1.
CP000951 Genomic DNA. Translation: ACB00195.1. Different initiation.
RefSeqYP_001735450.1. NC_010475.1.

3D structure databases

ProteinModelPortalP31968.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING32049.SYNPCC7002_A2214.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACB00195; ACB00195; SYNPCC7002_A2214.
GeneID6057351.
KEGGsyp:SYNPCC7002_A2214.
PATRIC23819066. VBISynSp37135_2466.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1413.
HOGENOMHOG000276575.
KOK02289.
OMAWVVRYAA.
OrthoDBEOG67T5M3.

Enzyme and pathway databases

BioCycSSP32049:GKF7-2215-MONOMER.

Family and domain databases

Gene3D1.25.10.10. 1 hit.
InterProIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR004155. PBS_lyase_HEAT.
[Graphical view]
PfamPF03130. HEAT_PBS. 2 hits.
[Graphical view]
SUPFAMSSF48371. SSF48371. 1 hit.
ProtoNetSearch...

Entry information

Entry nameCPCF_SYNP2
AccessionPrimary (citable) accession number: P31968
Secondary accession number(s): B1XIU3
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: April 16, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families