Reviewed,
UniProtKB/Swiss-Prot P31942 (HNRH3_HUMAN)
Last modified
November 24, 2009.
Version 104.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: Heterogeneous nuclear ribonucleoprotein H3 Short name=hnRNP H3 Short name=hnRNP 2H9 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 346 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Involved in the splicing process and participates in early heat shock-induced splicing arrest. Due to their great structural variations the different isoforms may possess different functions in the splicing reaction. |
| Subcellular location | |
| Sequence similarities | Contains 2 RRM (RNA recognition motif) domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | mRNA processing |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat |
| Ligand | RNA-binding |
| Molecular function | Ribonucleoprotein |
| PTM | Acetylation Methylation Phosphoprotein |
| Technical term | Complete proteome Direct protein sequencing |
| Gene Ontology (GO) | |
| Biological process | nuclear mRNA splicing, via spliceosome Ref.2 Non-traceable author statement. Source: UniProtKB |
| Cellular component | heterogeneous nuclear ribonucleoprotein complex Ref.1 Ref.2 Non-traceable author statement. Source: UniProtKB |
| Molecular function | RNA binding Ref.1 Ref.2 Non-traceable author statement. Source: UniProtKB nucleotide bindingInferred from electronic annotation. Source: InterPro protein bindingInferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| STK24 | Q5T5B3 | 1 | EBI-711437,EBI-1054809 | |
| TOB1 | P50616 | 1 | EBI-711437,EBI-723281 |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P31942-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P31942-2) Also known as: 2H9A; The sequence of this isoform differs from the canonical sequence as follows: 132-146: Missing. | ||||||
| Isoform 3 (identifier: P31942-3) Also known as: 2H9B; The sequence of this isoform differs from the canonical sequence as follows: 1-49: Missing. | ||||||
| Isoform 4 (identifier: P31942-4) Also known as: 2H9C; The sequence of this isoform differs from the canonical sequence as follows: 1-131: Missing. | ||||||
| Isoform 5 (identifier: P31942-5) Also known as: 2H9D; The sequence of this isoform differs from the canonical sequence as follows: 1-131: Missing. 259-276: QHRYIELFLNSTPGGGSG → RKWCLWHTILFPKREFIK 277-346: Missing. | ||||||
| Isoform 6 (identifier: P31942-6) Also known as: 2H9E; The sequence of this isoform differs from the canonical sequence as follows: 1-137: Missing. 138-145: RGGDGYDG → MCFSLNYT 259-276: QHRYIELFLNSTPGGGSG → RKWCLWHTILFPKREFIK 277-346: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 346 | 346 | Heterogeneous nuclear ribonucleoprotein H3 | PRO_0000081861 | |||||
Regions | |||||||||
| Domain | 16 – 93 | 78 | RRM 1 | ||||||
| Domain | 195 – 270 | 76 | RRM 2 | ||||||
| Compositional bias | 108 – 344 | 237 | Gly-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1 | 1 | N-acetylmethionine Ref.7 | ||||||
| Modified residue | 121 | 1 | Asymmetric dimethylarginine Ref.10 | ||||||
| Modified residue | 216 | 1 | Phosphoserine Ref.12 Ref.14 Ref.15 | ||||||
| Modified residue | 287 | 1 | Omega-N-methylarginine Ref.7 | ||||||
| Modified residue | 296 | 1 | Phosphotyrosine Ref.11 Ref.13 | ||||||
| Modified residue | 298 | 1 | Phosphoserine | ||||||
| Modified residue | 314 | 1 | Phosphothreonine | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 137 | 137 | Missing in isoform 6. | VSP_005841 | |||||
| Alternative sequence | 1 – 131 | 131 | Missing in isoform 4 and isoform 5. | VSP_005839 | |||||
| Alternative sequence | 1 – 49 | 49 | Missing in isoform 3. | VSP_005838 | |||||
| Alternative sequence | 132 – 146 | 15 | Missing in isoform 2. | VSP_005840 | |||||
| Alternative sequence | 138 – 145 | 8 | RGGDGYDG → MCFSLNYT in isoform 6. | VSP_005842 | |||||
| Alternative sequence | 259 – 276 | 18 | QHRYI…GGGSG → RKWCLWHTILFPKREFIK in isoform 5 and isoform 6. | VSP_005843 | |||||
| Alternative sequence | 277 – 346 | 70 | Missing in isoform 5 and isoform 6. | VSP_005844 | |||||
| Natural variant | 163 | 1 | N → S: dbSNP rs2273903. | VAR_020333 | |||||
| Natural variant | 284 | 1 | G → A: dbSNP rs16925347. | VAR_052226 | |||||
Sequences
| ||||||||||||||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Cloning of human 2H9 heterogeneous nuclear ribonucleoproteins. Relation with splicing and early heat shock-induced splicing arrest." Mahe D., Mahl P., Gattoni R., Fischer N., Mattei M.-G., Stevenin J., Fuchs J.-P. J. Biol. Chem. 272:1827-1836(1997) [PubMed: 8999868] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION. |
| [2] | "The hnRNP 2H9 gene, which is involved in the splicing reaction, is a multiply spliced gene." Honore B. Biochim. Biophys. Acta 1492:108-119(2000) [PubMed: 10858537] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1; 2; 3; 4; 5 AND 6). |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 4). Tissue: Brain and Placenta. |
| [4] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Uterus. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Ovary and Skin. |
| [7] | Bienvenut W.V., Lilla S., von Kriegsheim A., Lempens A., Kolch W. Submitted (DEC-2008) to UniProtKB Cited for: PROTEIN SEQUENCE OF 1-6; 56-76; 85-90; 98-104; 175-200; 223-253 AND 262-323, ACETYLATION AT MET-1, METHYLATION AT ARG-287, MASS SPECTROMETRY. Tissue: Ovarian carcinoma. |
| [8] | Lubec G., Vishwanath V., Chen W.-Q., Sun Y. Submitted (DEC-2008) to UniProtKB Cited for: PROTEIN SEQUENCE OF 56-67; 206-222; 233-253 AND 262-287, MASS SPECTROMETRY. Tissue: Brain, Cajal-Retzius cell and Fetal brain cortex. |
| [9] | "Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes." Rasmussen H.H., van Damme J., Puype M., Gesser B., Celis J.E., Vandekerckhove J. Electrophoresis 13:960-969(1992) [PubMed: 1286667] [Abstract] Cited for: PROTEIN SEQUENCE OF 94-104 AND 288-298. Tissue: Keratinocyte. |
| [10] | "A post-translational modification of nuclear proteins, N(G),N(G)-dimethyl-Arg, found in a natural HLA class I peptide ligand." Yague J., Vazquez J., Lopez de Castro J.A. Protein Sci. 9:2210-2217(2000) [PubMed: 11152131] [Abstract] Cited for: PROTEIN SEQUENCE OF 116-127, METHYLATION AT ARG-121. |
| [11] | "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells." Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H., Zha X.-M., Polakiewicz R.D., Comb M.J. Nat. Biotechnol. 23:94-101(2005) [PubMed: 15592455] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-296, MASS SPECTROMETRY. |
| [12] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-216, MASS SPECTROMETRY. Tissue: Epithelium. |
| [13] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-296, MASS SPECTROMETRY. |
| [14] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-216, MASS SPECTROMETRY. |
| [15] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-216, MASS SPECTROMETRY. |
| [16] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [17] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-216, MASS SPECTROMETRY. |
| [18] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-216; SER-298 AND THR-314, MASS SPECTROMETRY. Tissue: T-cell. |
Cross-references
Sequence databases | |
|---|---|
| L32610 mRNA. Translation: AAD45179.1. AF132360 Genomic DNA. Translation: AAF68843.1. AF132360 Genomic DNA. Translation: AAF68844.1. AF132360 Genomic DNA. Translation: AAF68845.1. AF132360 Genomic DNA. Translation: AAF68846.1. AF132360 Genomic DNA. Translation: AAF68847.1. AF132360 Genomic DNA. Translation: AAF68848.1. AF132361 mRNA. Translation: AAF68849.1. AF132362 mRNA. Translation: AAF68850.1. AF132363 mRNA. Translation: AAF68851.1. AF132364 mRNA. Translation: AAF68852.1. AK091411 mRNA. Translation: BAG52353.1. AK291547 mRNA. Translation: BAF84236.1. AL117395 mRNA. Translation: CAB55897.1. CH471083 Genomic DNA. Translation: EAW54281.1. CH471083 Genomic DNA. Translation: EAW54282.1. BC004511 mRNA. Translation: AAH04511.2. BC039824 mRNA. Translation: AAH39824.1. | |
| IPI | IPI00013877. IPI00216492. IPI00216493. IPI00216494. IPI00216495. IPI00216496. |
| PIR | T17207. |
| RefSeq | NP_036339.1. NP_067676.2. |
| UniGene | Hs.643472 |
3D structure databases | |
| SMR | P31942. Positions 10-97, 194-270. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P31942. 13 interactions. |
| STRING | P31942. |
PTM databases | |
| PhosphoSite | P31942. |
2-D gel databases | |
| Aarhus/Ghent-2DPAGE | 2222. IEF. |
Proteomic databases | |
| PRIDE | P31942. |
Genome annotation databases | |
| Ensembl | ENST00000265866; ENSP00000265866; ENSG00000096746; Homo sapiens. [Genome view] |
| GeneID | 3189. |
| KEGG | hsa:3189. |
| UCSC | uc001jnw.2. human. uc001jnx.2. human. uc001jny.2. human. |
Organism-specific databases | |
| CTD | 3189. |
| GeneCards | GC10P069762. |
| H-InvDB | HIX0008872. HIX0008873. |
| HGNC | HGNC:5043. HNRNPH3. |
| MIM | 602324. gene. |
| PharmGKB | PA29367. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | P31942. |
| OMA | PYDRPLG |
| OrthoDB | EOG9KH5F9 |
Gene expression databases | |
| ArrayExpress | P31942. |
| Bgee | P31942. |
| CleanEx | HS_HNRNPH3. |
| Genevestigator | P31942. |
| GermOnline | ENSG00000096746. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR012677. a_b_plait_nuc_bd. IPR000504. RRM_RNP1. [Graphical view] |
| Gene3D | G3DSA:3.30.70.330. a_b_plait_nuc_bd. 2 hits. |
| Pfam | PF00076. RRM_1. 2 hits. [Graphical view] |
| SMART | SM00360. RRM. 2 hits. [Graphical view] |
| PROSITE | PS50102. RRM. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 12680. |
| SOURCE | Search... |
Entry information
| Entry name | HNRH3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P31942 Secondary accession number(s): A8K682 Q9Y4J5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 10 Human chromosome 10: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


