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Protein

Uncharacterized protein YddB

Gene

yddB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11743-MONOMER.
ECOL316407:JW1490-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YddB
Alternative name(s):
CDS103
Gene namesi
Name:yddB
Ordered Locus Names:b1495, JW1490
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11743. yddB.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689411 – 790Uncharacterized protein YddBAdd BLAST790

Proteomic databases

PaxDbiP31827.
PRIDEiP31827.

Interactioni

Protein-protein interaction databases

BioGridi4260786. 154 interactors.
DIPiDIP-11661N.
IntActiP31827. 1 interactor.
STRINGi511145.b1495.

Structurei

3D structure databases

ProteinModelPortaliP31827.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1369.Curated

Phylogenomic databases

eggNOGiENOG4105PE1. Bacteria.
ENOG410XSVA. LUCA.
HOGENOMiHOG000120697.
OMAiNRYYGRS.

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 2 hits.
InterProiIPR012910. Plug_dom.
IPR000531. TonB-dep_rcpt_b-brl.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF00593. TonB_dep_Rec. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31827-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRVLIPGVI LCGADVAQAV DDKNMYMHFF EEMTVYAPVP VPVNGNTHYT
60 70 80 90 100
SESIERLPTG NGNISDLLRT NPAVRMDSTQ STSLNQGDIR PEKISIHGAS
110 120 130 140 150
PYQNAYLIDG ISATNNLNPA NESDASSATN ISGMSQGYYL DVSLLDNVTL
160 170 180 190 200
YDSFVPVEFG RFNGGVIDAK IKRFNADDSK VKLGYRTTRS DWLTSHIDEN
210 220 230 240 250
NKSAFNQGSS GSTYYSPDFK KNFYTLSFNQ ELADNFGVTA GLSRRQSDIT
260 270 280 290 300
RADYVSNDGI VAGRAQYKNV IDTALSKFTW FASDRFTHDL TLKYTGSSRD
310 320 330 340 350
YNTSTFPQSD REMGNKSYGL AWDMDTQLAW AKLRTTVGWD HISDYTRHDH
360 370 380 390 400
DIWYTELSCT YGDITGRCTR GGLGHISQAV DNYTFKTRLD WQKFAVGNVS
410 420 430 440 450
HQPYFGAEYI YSDAWTERHN QSESYVINAA GKKTNHTIYH KGKGRLGIDN
460 470 480 490 500
YTLYMADRIS WRNVSLMPGV RYDYDNYLSN HNISPRFMTE WDIFANQTSM
510 520 530 540 550
ITAGYNRYYG GNILDMGLRD IRNSWTESVS GNKTLTRYQD LKTPYNDELA
560 570 580 590 600
MGLQQKIGKN VIARANYVYR EAHDQISKSS RTDSATKTTI TEYNNDGKTK
610 620 630 640 650
THSFSLSFEL AEPLHIRQVD INPQIVFSYI KSKGNLSLNN GYEESNTGDN
660 670 680 690 700
QVVYNGNLVS YDSVPVADFN NPLKISLNMD FTHQPSGLVW ANTLAWQEAR
710 720 730 740 750
KARIILGKTN AQYISEYSDY KQYVDEKLDS SLTWDTRLSW TPQFLQQQNL
760 770 780 790
TISADILNVL DSKTAVDTTN TGVATYASGR TFWLDVSMKF
Length:790
Mass (Da):89,283
Last modified:November 1, 1997 - v2
Checksum:i907735A2A124E674
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti1 – 22MKRVL…QAVDD → MT (PubMed:9116051).CuratedAdd BLAST22
Sequence conflicti279 – 289TWFASDRFTHD → YLVCQRPLYPR in CAA50733 (PubMed:9116051).CuratedAdd BLAST11
Sequence conflicti503A → T in CAA50733 (PubMed:9116051).Curated1
Sequence conflicti534 – 545TLTRY…LKTPY → NSDALSGFE in CAA50733 (PubMed:9116051).CuratedAdd BLAST12
Sequence conflicti573 – 574HD → LV in CAA50733 (PubMed:9116051).Curated2
Sequence conflicti615 – 616HI → LY in CAA50733 (PubMed:9116051).Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X71917 Genomic DNA. Translation: CAA50733.1.
U00096 Genomic DNA. Translation: AAC74568.1.
AP009048 Genomic DNA. Translation: BAA15166.1.
PIRiB64903.
RefSeqiNP_416012.1. NC_000913.3.
WP_000832437.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74568; AAC74568; b1495.
BAA15166; BAA15166; BAA15166.
GeneIDi945961.
KEGGiecj:JW1490.
eco:b1495.
PATRICi32118284. VBIEscCol129921_1562.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X71917 Genomic DNA. Translation: CAA50733.1.
U00096 Genomic DNA. Translation: AAC74568.1.
AP009048 Genomic DNA. Translation: BAA15166.1.
PIRiB64903.
RefSeqiNP_416012.1. NC_000913.3.
WP_000832437.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31827.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260786. 154 interactors.
DIPiDIP-11661N.
IntActiP31827. 1 interactor.
STRINGi511145.b1495.

Proteomic databases

PaxDbiP31827.
PRIDEiP31827.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74568; AAC74568; b1495.
BAA15166; BAA15166; BAA15166.
GeneIDi945961.
KEGGiecj:JW1490.
eco:b1495.
PATRICi32118284. VBIEscCol129921_1562.

Organism-specific databases

EchoBASEiEB1694.
EcoGeneiEG11743. yddB.

Phylogenomic databases

eggNOGiENOG4105PE1. Bacteria.
ENOG410XSVA. LUCA.
HOGENOMiHOG000120697.
OMAiNRYYGRS.

Enzyme and pathway databases

BioCyciEcoCyc:EG11743-MONOMER.
ECOL316407:JW1490-MONOMER.

Miscellaneous databases

PROiP31827.

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 2 hits.
InterProiIPR012910. Plug_dom.
IPR000531. TonB-dep_rcpt_b-brl.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF00593. TonB_dep_Rec. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDDB_ECOLI
AccessioniPrimary (citable) accession number: P31827
Secondary accession number(s): P77572
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.