Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Type II secretion system protein E

Gene

xpsE

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi325 – 3328ATPSequence analysis

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • identical protein binding Source: IntAct
  • protein transporter activity Source: InterPro

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-659-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Type II secretion system protein E
Short name:
T2SS protein E
Alternative name(s):
General secretion pathway protein E
Type II traffic warden ATPase
Gene namesi
Name:xpsE
Synonyms:pefE
Ordered Locus Names:XCC0660
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 567567Type II secretion system protein EPRO_0000207291Add
BLAST

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
itself2EBI-8167266,EBI-8167266

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

IntActiP31742. 1 interaction.
MINTiMINT-2838574.
STRINGi190485.XCC0660.

Structurei

Secondary structure

1
567
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 1611Combined sources
Helixi22 – 276Combined sources
Helixi39 – 457Combined sources
Helixi51 – 6212Combined sources
Helixi69 – 713Combined sources
Helixi81 – 833Combined sources
Helixi88 – 947Combined sources
Beta strandi96 – 1027Combined sources
Beta strandi105 – 1117Combined sources
Helixi116 – 12611Combined sources
Beta strandi130 – 1345Combined sources
Helixi137 – 14711Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2D27X-ray2.21A1-149[»]
2D28X-ray2.00C1-149[»]
ProteinModelPortaliP31742.
SMRiP31742. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP31742.

Family & Domainsi

Sequence similaritiesi

Belongs to the GSP E family.Curated

Phylogenomic databases

eggNOGiENOG4107QHF. Bacteria.
COG2804. LUCA.
HOGENOMiHOG000008427.
KOiK02454.
OMAiFHVCPLA.
OrthoDBiEOG63Z76W.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR007831. GSPII_E_N.
IPR027417. P-loop_NTPase.
IPR013369. T2SS_GspE.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00437. T2SSE. 1 hit.
PF05157. T2SSE_N. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR02533. type_II_gspE. 1 hit.
PROSITEiPS00662. T2SP_E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31742-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQRSAETRI VEALLERRRL KDTDLVRARQ LQAESGMGLL ALLGRLGLVS
60 70 80 90 100
ERDHAETCAE VLGLPLVDAR QLGDTPPEML PEVQGLSLRF LKQFHLCPVG
110 120 130 140 150
ERDGRLDLWI ADPYDDYAID AVRLATGLPL LLQVGLRSEI DDLIERWYGQ
160 170 180 190 200
GRSAMGTIVE TADGDASSTD DIEALRDLAS EAPVIRLVNL VIQHAVELRA
210 220 230 240 250
SDIHIEPFES RLKVRYRVDG VLVEGESPPA KLTAAVISRI KIMAKLNIAE
260 270 280 290 300
RRLPQDGRIM LRVQGKELDL RVSTVPTAHG ESVVMRLLDR ETVVFDFYKL
310 320 330 340 350
GFTEDFLPQF RKVLEQPHGI MLVTGPTGSG KTTTLYTALS QLNTSDVKII
360 370 380 390 400
TVEDPVEYQI EGINQIQAKP QIGLDFANAL RSIVRQDPDI IMIGEMRDLE
410 420 430 440 450
TARIAIQSAL TGHLVLSTLH TNNAAGGITR LLDMGVEDYL LTSTINGILA
460 470 480 490 500
QRLVRKLDLA NAERYAASPE EIERFDLRRL QPDGEIFLYR PRATAAAPTG
510 520 530 540 550
YLGRTTIVEF LVMNDELRRA VMRRAGMGEI EQLARKSGMR TMYEDGLSKA
560
LRGETTIEEV LRVTEDA
Length:567
Mass (Da):63,144
Last modified:May 16, 2003 - v3
Checksum:i19B0E31CF14081FD
GO

Sequence cautioni

The sequence AAM39976.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence CAA41803.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti88 – 881L → V in CAA41803 (PubMed:1944223).Curated
Sequence conflicti133 – 1331Q → H in AAC27375 (Ref. 2) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59079 Genomic DNA. Translation: CAA41803.1. Different initiation.
L02630 Genomic DNA. Translation: AAC27375.4.
AE008922 Genomic DNA. Translation: AAM39976.1. Different initiation.
PIRiS17937.
T12056.
RefSeqiNP_636052.1. NC_003902.1.

Genome annotation databases

EnsemblBacteriaiAAM39976; AAM39976; XCC0660.
GeneIDi1000483.
KEGGixcc:XCC0660.
PATRICi24071978. VBIXanCam115730_0724.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59079 Genomic DNA. Translation: CAA41803.1. Different initiation.
L02630 Genomic DNA. Translation: AAC27375.4.
AE008922 Genomic DNA. Translation: AAM39976.1. Different initiation.
PIRiS17937.
T12056.
RefSeqiNP_636052.1. NC_003902.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2D27X-ray2.21A1-149[»]
2D28X-ray2.00C1-149[»]
ProteinModelPortaliP31742.
SMRiP31742. Positions 1-148.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP31742. 1 interaction.
MINTiMINT-2838574.
STRINGi190485.XCC0660.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM39976; AAM39976; XCC0660.
GeneIDi1000483.
KEGGixcc:XCC0660.
PATRICi24071978. VBIXanCam115730_0724.

Phylogenomic databases

eggNOGiENOG4107QHF. Bacteria.
COG2804. LUCA.
HOGENOMiHOG000008427.
KOiK02454.
OMAiFHVCPLA.
OrthoDBiEOG63Z76W.

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-659-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP31742.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR007831. GSPII_E_N.
IPR027417. P-loop_NTPase.
IPR013369. T2SS_GspE.
IPR001482. T2SS_protein-E.
[Graphical view]
PfamiPF00437. T2SSE. 1 hit.
PF05157. T2SSE_N. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR02533. type_II_gspE. 1 hit.
PROSITEiPS00662. T2SP_E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural characterization of protein secretion genes of the bacterial phytopathogen Xanthomonas campestris pathovar campestris: relatedness to secretion systems of other Gram-negative bacteria."
    Dums F., Dow J.M., Daniels M.J.
    Mol. Gen. Genet. 229:357-364(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 8000 NCPPB 1145.
  2. Hu N.-T.T., Hung M.-N., Wang K.C.
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: Xc1701.
  3. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25.

Entry informationi

Entry nameiGSPE_XANCP
AccessioniPrimary (citable) accession number: P31742
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: May 16, 2003
Last modified: July 6, 2016
This is version 116 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.