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Protein

Uncharacterized protein YadE

Gene

yadE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11749-MONOMER.
ECOL316407:JW0126-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YadE
Gene namesi
Name:yadE
Ordered Locus Names:b0130, JW0126
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11749. yadE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 409390Uncharacterized protein YadEPRO_0000013781Add
BLAST

Proteomic databases

PaxDbiP31666.
PRIDEiP31666.

Interactioni

Protein-protein interaction databases

BioGridi4259410. 279 interactions.
DIPiDIP-11183N.
IntActiP31666. 2 interactions.
STRINGi511145.b0130.

Structurei

3D structure databases

ProteinModelPortaliP31666.
SMRiP31666. Positions 166-384.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini232 – 409178NodB homologyPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 NodB homology domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4107BJW. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000116855.
InParanoidiP31666.
OMAiLQFMSIS.
OrthoDBiEOG6RRKJF.
PhylomeDBiP31666.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P31666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKQAVILLL MLFTASVSAA LPARYMQTIE NAAVWAQIGD KMVTVGNIRA
60 70 80 90 100
GQIIAVEPTA ASYYAFNFGF GKGFIDKGHL EPVQGRQKVE DGLGDLNKPL
110 120 130 140 150
SNQNLVTWKD TPVYNAPSAG SAPFGVLADN LRYPILHKLK DRLNQTWYQI
160 170 180 190 200
RIGDRLAYIS ALDAQPDNGL SVLTYHHILR DEENTRFRHT STTTSVRAFN
210 220 230 240 250
NQMAWLRDRG YATLSMVQLE GYVKNKINLP ARAVVITFDD GLKSVSRYAY
260 270 280 290 300
PVLKQYGMKA TAFIVTSRIK RHPQKWNPKS LQFMSVSELN EIRDVFDFQS
310 320 330 340 350
HTHFLHRVDG YRRPILLSRS EHNILFDFAR SRRALAQFNP HVWYLSYPFG
360 370 380 390 400
GFNDNAVKAA NDAGFHLAVT TMKGKVKPGD NPLLLKRLYI LRTDSLETMS

RLVSNQPQG
Length:409
Mass (Da):46,315
Last modified:November 1, 1997 - v2
Checksum:i03695FFA1EF0BCD9
GO

Sequence cautioni

The sequence AAA24275.1 differs from that shown. Reason: Frameshift at position 170. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73241.1.
AP009048 Genomic DNA. Translation: BAB96707.2.
L17086 Genomic DNA. Translation: AAA24275.1. Frameshift.
PIRiB64736.
RefSeqiNP_414672.1. NC_000913.3.
WP_000277917.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73241; AAC73241; b0130.
BAB96707; BAB96707; BAB96707.
GeneIDi946536.
KEGGiecj:JW0126.
eco:b0130.
PATRICi32115363. VBIEscCol129921_0133.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73241.1.
AP009048 Genomic DNA. Translation: BAB96707.2.
L17086 Genomic DNA. Translation: AAA24275.1. Frameshift.
PIRiB64736.
RefSeqiNP_414672.1. NC_000913.3.
WP_000277917.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31666.
SMRiP31666. Positions 166-384.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259410. 279 interactions.
DIPiDIP-11183N.
IntActiP31666. 2 interactions.
STRINGi511145.b0130.

Proteomic databases

PaxDbiP31666.
PRIDEiP31666.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73241; AAC73241; b0130.
BAB96707; BAB96707; BAB96707.
GeneIDi946536.
KEGGiecj:JW0126.
eco:b0130.
PATRICi32115363. VBIEscCol129921_0133.

Organism-specific databases

EchoBASEiEB1699.
EcoGeneiEG11749. yadE.

Phylogenomic databases

eggNOGiENOG4107BJW. Bacteria.
COG0726. LUCA.
HOGENOMiHOG000116855.
InParanoidiP31666.
OMAiLQFMSIS.
OrthoDBiEOG6RRKJF.
PhylomeDBiP31666.

Enzyme and pathway databases

BioCyciEcoCyc:EG11749-MONOMER.
ECOL316407:JW0126-MONOMER.

Miscellaneous databases

PROiP31666.

Family and domain databases

Gene3Di3.20.20.370. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR002509. NODB_dom.
[Graphical view]
PfamiPF01522. Polysacc_deac_1. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
PROSITEiPS51677. NODB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region."
    Fujita N., Mori H., Yura T., Ishihama A.
    Nucleic Acids Res. 22:1637-1639(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Nucleotide sequence of the Escherichia coli panBCD gene cluster."
    Merkel W.K., Nichols B.P.
    Submitted (JUN-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 76-409.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYADE_ECOLI
AccessioniPrimary (citable) accession number: P31666
Secondary accession number(s): P37022, P75659, Q8KJQ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 110 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.