P31542 (CLPAB_SOLLC) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic

Gene names

Name:

CD4B

Organism

Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [Reference proteome]

Taxonomic identifier

4081 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Lycopersicon

Protein attributes

Sequence length	923 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Function	May interact with a clpP-like protease involved in degradation of denatured proteins in the chloroplast.
Subcellular location	Plastid › chloroplast.
Sequence similarities	Belongs to the clpA/clpB family. Contains 1 UVR domain.

Ontologies

Keywords
Cellular component	Chloroplast Plastid
Domain	Repeat Transit peptide
Ligand	ATP-binding Nucleotide-binding
Molecular function	Chaperone
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	protein metabolic process Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW nucleoside-triphosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Transit peptide	1 – ?		Chloroplast Potential
	Chain	? – 923		ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic		PRO_0000005503
Regions
	Domain	509 – 544	36	UVR
	Nucleotide binding	300 – 307	8	ATP Potential
	Nucleotide binding	643 – 650	8	ATP Potential
	Region	255 – 502	248	I
	Region	569 – 760	192	II

Sequences

	Sequence		Length	Mass (Da)
	P31542 [UniParc]. Last modified July 1, 1993. Version 1. Checksum: 26E9D6CFD6974E65	FASTA	923	102,241
	10 20 30 40 50 60 MARALVQSTS IPSSVAGERT TKFNGSGKTK RAVTMLCNAQ SSSLTLRDFT GLRGCNAIDT 70 80 90 100 110 120 LVRSGETLQS KVAAATYVRR PRGCRFVPKA MFERFTEKAI KVIMLAQEEA RRLGHNFVGT 130 140 150 160 170 180 EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL 190 200 210 220 230 240 SLEEARQLGH NYIGSEHLLL GLLREGEGVA ARVLENLGAD PSNIRTQVIR MVGESNEAVG 250 260 270 280 290 300 ASVGGGTSGQ KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVTQILGR RTKNNPCLIG 310 320 330 340 350 360 EPGVGKTAIA EGLAQRIANG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI 370 380 390 400 410 420 KQSDEIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE LQCIGATTLD EYRKHIEKDP 430 440 450 460 470 480 ALERRFQPVK VPEPTVDETI QILKGLRERY EIHHKLRYTD EDLVAAAQLS YQYISDRFLP 490 500 510 520 530 540 DKAIDLIDEA GSRVRLRHAQ LPEEAKELEK ELRQITKEKN EAVRGQDFEK AGELRDREMD 550 560 570 580 590 600 LKAQITALID KNKEVSKAES EAADTGPLVT EADIQHIVSS WTGIPVEKVS TDESDRLLKM 610 620 630 640 650 660 EETLHTRIIG QDEAVKAISR AIRRARVGLK NPNRPIASFI FSGPTGVGKS ELAKALAAYY 670 680 690 700 710 720 FGSEEAMIRL DMSEFMERHT VSKLIGSPPG YVGYTEGGQL TEAVRRRPYT VVLFDEIEKA 730 740 750 760 770 780 HPDVFNMMLQ ILEDGRLTDS KGRTVDFKNT LLIMTSNVGS SVIEKGGRRI GFDLDLDEKD 790 800 810 820 830 840 SSYNRIKSLV TEELKQYFRP EFLNRLDEMI VFRQLTKLEV KEIADIMLKE VFERLKVKEI 850 860 870 880 890 900 ELQVTERFRD RVVDEGYNPS YGARPLRRAI MRLLEDSMAE KMLANEIKEG DSVIVDVDSD 910 920 GNVTVLNGSS GTPSDPAPEP IPV

References

[1]

"Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes." Gottesman S., Squires C., Pichersky E., Carrington M., Hobbs M., Mattick J.S., Dalrymple B., Kuramitsu H., Shiroza T., Foster T., Clark W.P., Ross B., Squires C.L., Maurizi M.R. Proc. Natl. Acad. Sci. U.S.A. 87:3513-3517(1990) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	M32604 Genomic DNA. Translation: AAA34161.1.
PIR	B35905.
3D structure databases
ProteinModelPortal	P31542.
SMR	P31542. Positions 252-444.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
KEGG	dosa:Os12t0230100-01.
Family and domain databases
Gene3D	1.10.1780.10. 1 hit.
InterPro	IPR003593. AAA+_ATPase. IPR013093. ATPase_AAA-2. IPR003959. ATPase_AAA_core. IPR018368. Chaperonin_ClpA/B_CS. IPR001270. Chaprnin_ClpA/B. IPR019489. Clp_ATPase_C. IPR004176. Clp_N. IPR023150. Dbl_Clp-N. IPR001943. UVR_dom. [Graphical view]
Pfam	PF00004. AAA. 1 hit. PF07724. AAA_2. 1 hit. PF02861. Clp_N. 2 hits. PF10431. ClpB_D2-small. 1 hit. PF02151. UVR. 1 hit. [Graphical view]
PRINTS	PR00300. CLPPROTEASEA.
SMART	SM00382. AAA. 2 hits. SM01086. ClpB_D2-small. 1 hit. [Graphical view]
PROSITE	PS00870. CLPAB_1. 1 hit. PS00871. CLPAB_2. 1 hit. PS50151. UVR. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

CLPAB_SOLLC

Accession

Primary (citable) accession number: P31542

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 1993
Last sequence update:	July 1, 1993
Last modified:	April 3, 2013
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program