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Protein

HTH-type transcriptional regulator YidZ

Gene

yidZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Involved in anaerobic NO protection.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi25 – 4420H-T-H motifBy similarityAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG11721-MONOMER.
ECOL316407:JW3689-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YidZ
Gene namesi
Name:yidZ
Ordered Locus Names:b3711, JW3689
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11721. yidZ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 319319HTH-type transcriptional regulator YidZPRO_0000105801Add
BLAST

Proteomic databases

PaxDbiP31463.

Interactioni

Protein-protein interaction databases

BioGridi4262597. 8 interactions.
DIPiDIP-12458N.
IntActiP31463. 2 interactions.
MINTiMINT-1257535.
STRINGi511145.b3711.

Structurei

3D structure databases

ProteinModelPortaliP31463.
SMRiP31463. Positions 13-86, 99-314.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 6558HTH lysR-typeAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105G2Y. Bacteria.
ENOG410XRYC. LUCA.
HOGENOMiHOG000103694.
OMAiLDKPHHE.
PhylomeDBiP31463.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31463-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSITTLDL NLLLCLQLLM QERSVTKAAK RINVTPSAVS KSLAKLRAWF
60 70 80 90 100
DDPLFVNSPL GLSPTPLMVS MEQNLAEWMQ MSNLLLDKPH HQTPRGLKFE
110 120 130 140 150
LAAESPLMMI MLNALSKQIY QRYPQATIKL RNWDYDSLDA ITRGEVDIGF
160 170 180 190 200
SGRESHPRSR ELLSSLPLAI DYEVLFSDVP CVWLRKDHPA LHQTWNLDTF
210 220 230 240 250
LRYPHISICW EQSDTWALDN VLQELGRERT IAMSLPEFEQ SLFMAAQPDN
260 270 280 290 300
LLLATAPRYC QYYNQLHQLP LVALPLPFDE SQQKKLEVPF TLLWHKRNSH
310
NPKIVWLRET IKNLYASMA
Length:319
Mass (Da):36,882
Last modified:July 1, 1993 - v1
Checksum:i8E49CF88397EB125
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62062.1.
U00096 Genomic DNA. Translation: AAC76734.1.
AP009048 Genomic DNA. Translation: BAE77579.1.
PIRiH65173.
RefSeqiNP_418167.1. NC_000913.3.
WP_001311238.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76734; AAC76734; b3711.
BAE77579; BAE77579; BAE77579.
GeneIDi948227.
KEGGiecj:JW3689.
eco:b3711.
PATRICi32122917. VBIEscCol129921_3834.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62062.1.
U00096 Genomic DNA. Translation: AAC76734.1.
AP009048 Genomic DNA. Translation: BAE77579.1.
PIRiH65173.
RefSeqiNP_418167.1. NC_000913.3.
WP_001311238.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31463.
SMRiP31463. Positions 13-86, 99-314.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262597. 8 interactions.
DIPiDIP-12458N.
IntActiP31463. 2 interactions.
MINTiMINT-1257535.
STRINGi511145.b3711.

Proteomic databases

PaxDbiP31463.

Protocols and materials databases

DNASUi948227.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76734; AAC76734; b3711.
BAE77579; BAE77579; BAE77579.
GeneIDi948227.
KEGGiecj:JW3689.
eco:b3711.
PATRICi32122917. VBIEscCol129921_3834.

Organism-specific databases

EchoBASEiEB1672.
EcoGeneiEG11721. yidZ.

Phylogenomic databases

eggNOGiENOG4105G2Y. Bacteria.
ENOG410XRYC. LUCA.
HOGENOMiHOG000103694.
OMAiLDKPHHE.
PhylomeDBiP31463.

Enzyme and pathway databases

BioCyciEcoCyc:EG11721-MONOMER.
ECOL316407:JW3689-MONOMER.

Miscellaneous databases

PROiP31463.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIDZ_ECOLI
AccessioniPrimary (citable) accession number: P31463
Secondary accession number(s): Q2M827
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: September 7, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.