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Protein

HTH-type transcriptional regulator YidZ

Gene

yidZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in anaerobic NO protection.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi25 – 44H-T-H motifBy similarityAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11721-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YidZ
Gene namesi
Name:yidZ
Ordered Locus Names:b3711, JW3689
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11721 yidZ

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001058011 – 319HTH-type transcriptional regulator YidZAdd BLAST319

Proteomic databases

PaxDbiP31463
PRIDEiP31463

Interactioni

Protein-protein interaction databases

BioGridi4262597, 8 interactors
DIPiDIP-12458N
IntActiP31463, 2 interactors
STRINGi316385.ECDH10B_3898

Structurei

3D structure databases

ProteinModelPortaliP31463
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 65HTH lysR-typeAdd BLAST58

Phylogenomic databases

eggNOGiENOG4105G2Y Bacteria
ENOG410XRYC LUCA
HOGENOMiHOG000103694
OMAiYRYRSVS
PhylomeDBiP31463

Family and domain databases

CDDicd08417 PBP2_Nitroaromatics_like, 1 hit
Gene3Di1.10.10.10, 1 hit
HAMAPiMF_01607 HTH_type_YidZ, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR023746 Tscrpt_reg_YidZ
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
IPR037402 YidZ_PBP2
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P31463-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSITTLDL NLLLCLQLLM QERSVTKAAK RINVTPSAVS KSLAKLRAWF
60 70 80 90 100
DDPLFVNSPL GLSPTPLMVS MEQNLAEWMQ MSNLLLDKPH HQTPRGLKFE
110 120 130 140 150
LAAESPLMMI MLNALSKQIY QRYPQATIKL RNWDYDSLDA ITRGEVDIGF
160 170 180 190 200
SGRESHPRSR ELLSSLPLAI DYEVLFSDVP CVWLRKDHPA LHQTWNLDTF
210 220 230 240 250
LRYPHISICW EQSDTWALDN VLQELGRERT IAMSLPEFEQ SLFMAAQPDN
260 270 280 290 300
LLLATAPRYC QYYNQLHQLP LVALPLPFDE SQQKKLEVPF TLLWHKRNSH
310
NPKIVWLRET IKNLYASMA
Length:319
Mass (Da):36,882
Last modified:July 1, 1993 - v1
Checksum:i8E49CF88397EB125
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA Translation: AAA62062.1
U00096 Genomic DNA Translation: AAC76734.1
AP009048 Genomic DNA Translation: BAE77579.1
PIRiH65173
RefSeqiNP_418167.1, NC_000913.3
WP_001311238.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76734; AAC76734; b3711
BAE77579; BAE77579; BAE77579
GeneIDi948227
KEGGiecj:JW3689
eco:b3711
PATRICifig|1411691.4.peg.2990

Similar proteinsi

Entry informationi

Entry nameiYIDZ_ECOLI
AccessioniPrimary (citable) accession number: P31463
Secondary accession number(s): Q2M827
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: April 25, 2018
This is version 138 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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