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Protein

Galactonate operon transcriptional repressor

Gene

dgoR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi31 – 50H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7790-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Galactonate operon transcriptional repressor
Gene namesi
Name:dgoR
Synonyms:yidW
Ordered Locus Names:b4479, JW5627
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11718 dgoR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000506211 – 229Galactonate operon transcriptional repressorAdd BLAST229

Proteomic databases

PaxDbiP31460
PRIDEiP31460

Interactioni

Protein-protein interaction databases

BioGridi426337313 interactors.
DIPiDIP-9435N
STRINGi316385.ECDH10B_3881

Structurei

3D structure databases

ProteinModelPortaliP31460
SMRiP31460
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 71HTH gntR-typePROSITE-ProRule annotationAdd BLAST71

Phylogenomic databases

eggNOGiENOG4105EMF Bacteria
COG2186 LUCA
HOGENOMiHOG000273996
InParanoidiP31460
KOiK19776
OMAiREMIEPY
PhylomeDBiP31460

Family and domain databases

CDDicd07377 WHTH_GntR, 1 hit
Gene3Di1.10.10.101 hit
1.20.120.5301 hit
InterProiView protein in InterPro
IPR011711 GntR_C
IPR008920 TF_FadR/GntR_C
IPR000524 Tscrpt_reg_HTH_GntR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF07729 FCD, 1 hit
PF00392 GntR, 1 hit
PRINTSiPR00035 HTHGNTR
SMARTiView protein in SMART
SM00895 FCD, 1 hit
SM00345 HTH_GNTR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF48008 SSF48008, 1 hit
PROSITEiView protein in PROSITE
PS50949 HTH_GNTR, 1 hit

Sequencei

Sequence statusi: Complete.

P31460-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLNKTDRIV ITLGKQIVHG KYVPGSPLPA EAELCEEFAT SRNIIREVFR
60 70 80 90 100
SLMAKRLIEM KRYRGAFVAP RNQWNYLDTD VLQWVLENDY DPRLISAMSE
110 120 130 140 150
VRNLVEPAIA RWAAERATSS DLAQIESALN EMIANNQDRE AFNEADIRYH
160 170 180 190 200
EAVLQSVHNP VLQQLSIAIS SLQRAVFERT WMGDEANMPQ TLQEHKALFD
210 220
AIRHQDGDAA EQAALTMIAS STRRLKEIT
Length:229
Mass (Da):26,080
Last modified:October 11, 2004 - v4
Checksum:iEE41742299285B8F
GO

Sequence cautioni

The sequence AAA62046 differs from that shown. Reason: Frameshift at position 174.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti111 – 112RW → VA in AAA62046 (PubMed:7686882).Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA Translation: AAA62046.1 Frameshift.
U00096 Genomic DNA Translation: AAT48199.1
AP009048 Genomic DNA Translation: BAE77599.1
RefSeqiWP_000174305.1, NZ_LN832404.1
YP_026239.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAT48199; AAT48199; b4479
BAE77599; BAE77599; BAE77599
GeneIDi2847767
KEGGiecj:JW5627
eco:b4479
PATRICifig|1411691.4.peg.3008

Similar proteinsi

Entry informationi

Entry nameiDGOR_ECOLI
AccessioniPrimary (citable) accession number: P31460
Secondary accession number(s): O32529
, P76735, Q2M807, Q6BF15
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: October 11, 2004
Last modified: March 28, 2018
This is version 136 of the entry and version 4 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome