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Protein

Uncharacterized HTH-type transcriptional regulator YidP

Gene

yidP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi28 – 4720H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG11711-MONOMER.
ECOL316407:JW3661-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YidP
Gene namesi
Name:yidP
Ordered Locus Names:b3684, JW3661
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11711. yidP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 238238Uncharacterized HTH-type transcriptional regulator YidPPRO_0000050681Add
BLAST

Proteomic databases

PaxDbiP31453.
PRIDEiP31453.

Interactioni

Protein-protein interaction databases

BioGridi4260806. 10 interactions.
IntActiP31453. 1 interaction.
STRINGi511145.b3684.

Structurei

3D structure databases

ProteinModelPortaliP31453.
SMRiP31453. Positions 2-224.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6868HTH gntR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiP31453.
KOiK03482.
OMAiPMAIESS.
PhylomeDBiP31453.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31453-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIYKSIAERL RIRLNSADFT LNSLLPGEKK LAEEFAVSRM TIRKAIDLLV
60 70 80 90 100
AWGLVVRRHG SGTYLVRKDV LHQTASLTGL VEVLKRQGKT VTSQVLIFEI
110 120 130 140 150
MPAPPAIASQ LRIQINEQIY FSRRVRFVEG KPLMLEDSYM PVKLFRNLSL
160 170 180 190 200
QHLEGSKFEY IEQECGILIG GNYESLTPVL ADRLLARQMK VAEHTPLLRI
210 220 230
TSLSYSESGE FLNYSVMFRN ASEYQVEYHL RRLHPEKS
Length:238
Mass (Da):27,328
Last modified:July 1, 1993 - v1
Checksum:i565A83569D052893
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62036.1.
U00096 Genomic DNA. Translation: AAC76707.1.
AP009048 Genomic DNA. Translation: BAE77610.1.
PIRiE65170.
RefSeqiNP_418139.1. NC_000913.3.
WP_001300779.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76707; AAC76707; b3684.
BAE77610; BAE77610; BAE77610.
GeneIDi948194.
KEGGiecj:JW3661.
eco:b3684.
PATRICi32122861. VBIEscCol129921_3806.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62036.1.
U00096 Genomic DNA. Translation: AAC76707.1.
AP009048 Genomic DNA. Translation: BAE77610.1.
PIRiE65170.
RefSeqiNP_418139.1. NC_000913.3.
WP_001300779.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31453.
SMRiP31453. Positions 2-224.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260806. 10 interactions.
IntActiP31453. 1 interaction.
STRINGi511145.b3684.

Proteomic databases

PaxDbiP31453.
PRIDEiP31453.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76707; AAC76707; b3684.
BAE77610; BAE77610; BAE77610.
GeneIDi948194.
KEGGiecj:JW3661.
eco:b3684.
PATRICi32122861. VBIEscCol129921_3806.

Organism-specific databases

EchoBASEiEB1662.
EcoGeneiEG11711. yidP.

Phylogenomic databases

eggNOGiENOG4105FDP. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000228717.
InParanoidiP31453.
KOiK03482.
OMAiPMAIESS.
PhylomeDBiP31453.

Enzyme and pathway databases

BioCyciEcoCyc:EG11711-MONOMER.
ECOL316407:JW3661-MONOMER.

Miscellaneous databases

PROiP31453.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
PRINTSiPR00035. HTHGNTR.
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIDP_ECOLI
AccessioniPrimary (citable) accession number: P31453
Secondary accession number(s): Q2M7Z6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: September 7, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.