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Protein

Uncharacterized HTH-type transcriptional regulator YidL

Gene

yidL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi204 – 22522H-T-H motifPROSITE-ProRule annotationAdd
BLAST
DNA bindingi252 – 27524H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • positive regulation of transcription, DNA-templated Source: EcoCyc
  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:EG11707-MONOMER.
ECOL316407:JW3656-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YidL
Gene namesi
Name:yidL
Ordered Locus Names:b3680, JW3656
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11707. yidL.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 297297Uncharacterized HTH-type transcriptional regulator YidLPRO_0000194615Add
BLAST

Proteomic databases

PaxDbiP31449.

Interactioni

Protein-protein interaction databases

BioGridi4262588. 6 interactions.
IntActiP31449. 10 interactions.
STRINGi511145.b3680.

Structurei

3D structure databases

ProteinModelPortaliP31449.
SMRiP31449. Positions 185-279.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini187 – 28599HTH araC/xylS-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH araC/xylS-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108AHD. Bacteria.
ENOG410ZPV3. LUCA.
HOGENOMiHOG000126327.
InParanoidiP31449.
OrthoDBiEOG67T5GG.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
2.60.120.280. 1 hit.
InterProiIPR003313. AraC-bd.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
[Graphical view]
PfamiPF02311. AraC_binding. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF51215. SSF51215. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31449-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNGKLQSSDV KNETPYNIPL LINENVISSG ISLISLWHTY ADEHYRVIWP
60 70 80 90 100
RDKKKPLIAN SWVAVYTVQG CGKILLKNGE QITLHGNCII FLKPMDIHSY
110 120 130 140 150
HCEGLVWEQY WMEFTPTSMM DIPVGQQSVI YNGEIYNQEL TEVAELITSP
160 170 180 190 200
EAIKNNLAVA FLTKIIYQWI CLMYADGKKD PQRRQIEKLI ATLHASLQQR
210 220 230 240 250
WSVADMAATI PCSEAWLRRL FLRYTGKTPK EYYLDARLDL ALSLLKQQGN
260 270 280 290
SVGEVADTLN FFDSFHFSKA FKHKFGYAPS AVLKNTDQHP TDASPHN
Length:297
Mass (Da):33,958
Last modified:November 24, 2009 - v2
Checksum:i2F67276C1B427F5F
GO

Sequence cautioni

The sequence AAA62032.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAE77613.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62032.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76703.2.
AP009048 Genomic DNA. Translation: BAE77613.1. Different initiation.
PIRiA65170.
RefSeqiNP_418136.2. NC_000913.3.
WP_001013540.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76703; AAC76703; b3680.
BAE77613; BAE77613; BAE77613.
GeneIDi948186.
KEGGiecj:JW3656.
eco:b3680.
PATRICi32122851. VBIEscCol129921_3801.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62032.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76703.2.
AP009048 Genomic DNA. Translation: BAE77613.1. Different initiation.
PIRiA65170.
RefSeqiNP_418136.2. NC_000913.3.
WP_001013540.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31449.
SMRiP31449. Positions 185-279.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262588. 6 interactions.
IntActiP31449. 10 interactions.
STRINGi511145.b3680.

Proteomic databases

PaxDbiP31449.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76703; AAC76703; b3680.
BAE77613; BAE77613; BAE77613.
GeneIDi948186.
KEGGiecj:JW3656.
eco:b3680.
PATRICi32122851. VBIEscCol129921_3801.

Organism-specific databases

EchoBASEiEB1658.
EcoGeneiEG11707. yidL.

Phylogenomic databases

eggNOGiENOG4108AHD. Bacteria.
ENOG410ZPV3. LUCA.
HOGENOMiHOG000126327.
InParanoidiP31449.
OrthoDBiEOG67T5GG.

Enzyme and pathway databases

BioCyciEcoCyc:EG11707-MONOMER.
ECOL316407:JW3656-MONOMER.

Miscellaneous databases

PROiP31449.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
2.60.120.280. 1 hit.
InterProiIPR003313. AraC-bd.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
[Graphical view]
PfamiPF02311. AraC_binding. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
SSF51215. SSF51215. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication."
    Burland V.D., Plunkett G. III, Daniels D.L., Blattner F.R.
    Genomics 16:551-561(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYIDL_ECOLI
AccessioniPrimary (citable) accession number: P31449
Secondary accession number(s): Q2M7Z3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: November 24, 2009
Last modified: January 20, 2016
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.