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Protein

Uncharacterized symporter YidK

Gene

yidK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ion transport, Sodium transport, Symport, Transport

Keywords - Ligandi

Sodium

Enzyme and pathway databases

BioCyciEcoCyc:YIDK-MONOMER.
ECOL316407:JW3655-MONOMER.

Protein family/group databases

TCDBi2.A.21.3.21. the solute:sodium symporter (sss) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized symporter YidK
Gene namesi
Name:yidK
Ordered Locus Names:b3679, JW3655
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11706. yidK.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 3CytoplasmicSequence analysis3
Transmembranei4 – 24HelicalSequence analysisAdd BLAST21
Topological domaini25 – 74PeriplasmicSequence analysisAdd BLAST50
Transmembranei75 – 95HelicalSequence analysisAdd BLAST21
Topological domaini96 – 118CytoplasmicSequence analysisAdd BLAST23
Transmembranei119 – 139HelicalSequence analysisAdd BLAST21
Topological domaini140 – 162PeriplasmicSequence analysisAdd BLAST23
Transmembranei163 – 183HelicalSequence analysisAdd BLAST21
Topological domaini184 – 191CytoplasmicSequence analysis8
Transmembranei192 – 212HelicalSequence analysisAdd BLAST21
Topological domaini213 – 240PeriplasmicSequence analysisAdd BLAST28
Transmembranei241 – 261HelicalSequence analysisAdd BLAST21
Topological domaini262 – 283CytoplasmicSequence analysisAdd BLAST22
Transmembranei284 – 304HelicalSequence analysisAdd BLAST21
Topological domaini305 – 324PeriplasmicSequence analysisAdd BLAST20
Transmembranei325 – 345HelicalSequence analysisAdd BLAST21
Topological domaini346 – 380CytoplasmicSequence analysisAdd BLAST35
Transmembranei381 – 401HelicalSequence analysisAdd BLAST21
Topological domaini402 – 415PeriplasmicSequence analysisAdd BLAST14
Transmembranei416 – 436HelicalSequence analysisAdd BLAST21
Topological domaini437CytoplasmicSequence analysis1
Transmembranei438 – 458HelicalSequence analysisAdd BLAST21
Topological domaini459 – 460PeriplasmicSequence analysis2
Transmembranei461 – 481HelicalSequence analysisAdd BLAST21
Topological domaini482 – 505CytoplasmicSequence analysisAdd BLAST24
Transmembranei506 – 526HelicalSequence analysisAdd BLAST21
Topological domaini527 – 532PeriplasmicSequence analysis6
Transmembranei533 – 553HelicalSequence analysisAdd BLAST21
Topological domaini554 – 571CytoplasmicSequence analysisAdd BLAST18

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001054061 – 571Uncharacterized symporter YidKAdd BLAST571

Proteomic databases

PaxDbiP31448.
PRIDEiP31448.

Interactioni

Protein-protein interaction databases

BioGridi4261452. 162 interactors.
DIPiDIP-12450N.
IntActiP31448. 5 interactors.
MINTiMINT-1256907.
STRINGi511145.b3679.

Structurei

3D structure databases

ProteinModelPortaliP31448.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107RUZ. Bacteria.
COG4146. LUCA.
HOGENOMiHOG000025424.
InParanoidiP31448.
KOiK03307.
OMAiLAQFGGY.
PhylomeDBiP31448.

Family and domain databases

InterProiIPR001734. Na/solute_symporter.
IPR018212. Na/solute_symporter_CS.
[Graphical view]
PANTHERiPTHR11819. PTHR11819. 2 hits.
PfamiPF00474. SSF. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00813. sss. 1 hit.
PROSITEiPS00456. NA_SOLUT_SYMP_1. 1 hit.
PS50283. NA_SOLUT_SYMP_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31448-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSLQILSFV GFTLLVAVIT WWKVRKTDTG SQQGYFLAGR SLKAPVIAAS
60 70 80 90 100
LMLTNLSTEQ LVGLSGQAYK SGMSVMGWEV TSAVTLIFLA LIFLPRYLKR
110 120 130 140 150
GIATIPDFLE ERYDKTTRII IDFCFLIATG VCFLPIVLYS GALALNSLFH
160 170 180 190 200
VGESLQISHG AAIWLLVILL GLAGILYAVI GGLRAMAVAD SINGIGLVIG
210 220 230 240 250
GLMVPVFGLI AMGKGSFMQG IEQLTTVHAE KLNSIGGPTD PLPIGAAFTG
260 270 280 290 300
LILVNTFYWC TNQGIVQRTL ASKSLAEGQK GALLTAVLKM LDPLVLVLPG
310 320 330 340 350
LIAFHLYQDL PKADMAYPTL VNNVLPVPMV GFFGAVLFGA VISTFNGFLN
360 370 380 390 400
SASTLFSMGI YRRIINQNAE PQQLVTVGRK FGFFIAIVSV LVAPWIANAP
410 420 430 440 450
QGLYSWMKQL NGIYNVPLVT IIIMGFFFPR IPALAAKVAM GIGIISYITI
460 470 480 490 500
NYLVKFDFHF LYVLACTFCI NVVVMLVIGF IKPRATPFTF KDAFAVDMKP
510 520 530 540 550
WKNVKIASIG ILFAMIGVYA GLAEFGGYGT RWLAMISYFI AAVVIVYLIF
560 570
DSWRHRHDPA VTFTPDGKDS L
Length:571
Mass (Da):62,085
Last modified:July 1, 1993 - v1
Checksum:i486AB89A6A2EACCF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62031.1.
U00096 Genomic DNA. Translation: AAC76702.1.
AP009048 Genomic DNA. Translation: BAE77614.1.
PIRiH65169.
RefSeqiNP_418135.1. NC_000913.3.
WP_001087145.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76702; AAC76702; b3679.
BAE77614; BAE77614; BAE77614.
GeneIDi948185.
KEGGiecj:JW3655.
eco:b3679.
PATRICi32122849. VBIEscCol129921_3800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10328 Genomic DNA. Translation: AAA62031.1.
U00096 Genomic DNA. Translation: AAC76702.1.
AP009048 Genomic DNA. Translation: BAE77614.1.
PIRiH65169.
RefSeqiNP_418135.1. NC_000913.3.
WP_001087145.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31448.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261452. 162 interactors.
DIPiDIP-12450N.
IntActiP31448. 5 interactors.
MINTiMINT-1256907.
STRINGi511145.b3679.

Protein family/group databases

TCDBi2.A.21.3.21. the solute:sodium symporter (sss) family.

Proteomic databases

PaxDbiP31448.
PRIDEiP31448.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76702; AAC76702; b3679.
BAE77614; BAE77614; BAE77614.
GeneIDi948185.
KEGGiecj:JW3655.
eco:b3679.
PATRICi32122849. VBIEscCol129921_3800.

Organism-specific databases

EchoBASEiEB1657.
EcoGeneiEG11706. yidK.

Phylogenomic databases

eggNOGiENOG4107RUZ. Bacteria.
COG4146. LUCA.
HOGENOMiHOG000025424.
InParanoidiP31448.
KOiK03307.
OMAiLAQFGGY.
PhylomeDBiP31448.

Enzyme and pathway databases

BioCyciEcoCyc:YIDK-MONOMER.
ECOL316407:JW3655-MONOMER.

Miscellaneous databases

PROiP31448.

Family and domain databases

InterProiIPR001734. Na/solute_symporter.
IPR018212. Na/solute_symporter_CS.
[Graphical view]
PANTHERiPTHR11819. PTHR11819. 2 hits.
PfamiPF00474. SSF. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00813. sss. 1 hit.
PROSITEiPS00456. NA_SOLUT_SYMP_1. 1 hit.
PS50283. NA_SOLUT_SYMP_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIDK_ECOLI
AccessioniPrimary (citable) accession number: P31448
Secondary accession number(s): Q2M7Z2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: November 2, 2016
This is version 132 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.