Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

5-hydroxytryptamine receptor 6

Gene

Htr6

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

This is one of the several different receptors for 5-hydroxytryptamine (serotonin), a biogenic hormone that functions as a neurotransmitter, a hormone, and a mitogen. The activity of this receptor is mediated by G proteins that stimulate adenylate cyclase. It has a high affinity for tricyclic psychotropic drugs (PubMed:7680751). Controls pyramidal neurons migration during corticogenesis, through the regulation of CDK5 activity (By similarity). Is an activator of TOR signaling (By similarity).By similarity1 Publication

GO - Molecular functioni

GO - Biological processi

  • brain development Source: RGD
  • cerebral cortex cell migration Source: UniProtKB
  • G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger Source: RGD
  • learning Source: RGD
  • long-term synaptic potentiation Source: RGD
  • negative regulation of acetylcholine secretion, neurotransmission Source: RGD
  • negative regulation of gamma-aminobutyric acid secretion Source: RGD
  • negative regulation of glutamate secretion Source: RGD
  • positive regulation of dopamine secretion Source: RGD
  • positive regulation of gamma-aminobutyric acid secretion Source: RGD
  • positive regulation of TOR signaling Source: UniProtKB
  • response to drug Source: RGD
  • response to estradiol Source: RGD
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Enzyme and pathway databases

ReactomeiR-RNO-390666. Serotonin receptors.
R-RNO-418555. G alpha (s) signalling events.

Names & Taxonomyi

Protein namesi
Recommended name:
5-hydroxytryptamine receptor 6
Short name:
5-HT-6
Short name:
5-HT6
Alternative name(s):
ST-B17
Serotonin receptor 6
Gene namesi
Name:Htr6
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi62044. Htr6.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 34ExtracellularBy similarityAdd BLAST34
Transmembranei35 – 57Helical; Name=1By similarityAdd BLAST23
Topological domaini58 – 64CytoplasmicBy similarity7
Transmembranei65 – 85Helical; Name=2By similarityAdd BLAST21
Topological domaini86 – 100ExtracellularBy similarityAdd BLAST15
Transmembranei101 – 122Helical; Name=3By similarityAdd BLAST22
Topological domaini123 – 144CytoplasmicBy similarityAdd BLAST22
Transmembranei145 – 166Helical; Name=4By similarityAdd BLAST22
Topological domaini167 – 184ExtracellularBy similarityAdd BLAST18
Transmembranei185 – 208Helical; Name=5By similarityAdd BLAST24
Topological domaini209 – 265CytoplasmicBy similarityAdd BLAST57
Transmembranei266 – 290Helical; Name=6By similarityAdd BLAST25
Topological domaini291 – 295ExtracellularBy similarity5
Transmembranei296 – 320Helical; Name=7By similarityAdd BLAST25
Topological domaini321 – 436CytoplasmicBy similarityAdd BLAST116

GO - Cellular componenti

  • dendrite Source: RGD
  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: RGD
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

Pathology & Biotechi

Chemistry databases

ChEMBLiCHEMBL3372.
GuidetoPHARMACOLOGYi11.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000689771 – 4365-hydroxytryptamine receptor 6Add BLAST436

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi9N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi99 ↔ 180PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP31388.

PTM databases

iPTMnetiP31388.
PhosphoSitePlusiP31388.

Expressioni

Tissue specificityi

Localized exclusively in the central nervous system, predominantly in the corpus striatum but also in various limbic and cortical regions.

Gene expression databases

BgeeiENSRNOG00000049761.
ExpressionAtlasiP31388. differential.
GenevisibleiP31388. RN.

Interactioni

Subunit structurei

Interacts with MTOR, RPTOR and NF1 (By similarity). Interacts with CDK5 (By similarity).By similarity

Protein-protein interaction databases

BioGridi249039. 1 interactor.
MINTiMINT-7214733.
STRINGi10116.ENSRNOP00000064366.

Chemistry databases

BindingDBiP31388.

Structurei

3D structure databases

ProteinModelPortaliP31388.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the G-protein coupled receptor 1 family.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG3656. Eukaryota.
ENOG410XRW9. LUCA.
GeneTreeiENSGT00760000118774.
HOVERGENiHBG106962.
InParanoidiP31388.

Family and domain databases

InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
SMARTiSM01381. 7TM_GPCR_Srsx. 1 hit.
[Graphical view]
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31388-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVPEPGPVNS STPAWGPGPP PAPGGSGWVA AALCVVIVLT AAANSLLIVL
60 70 80 90 100
ICTQPALRNT SNFFLVSLFT SDLMVGLVVM PPAMLNALYG RWVLARGLCL
110 120 130 140 150
LWTAFDVMCC SASILNLCLI SLDRYLLILS PLRYKLRMTA PRALALILGA
160 170 180 190 200
WSLAALASFL PLLLGWHELG KARTPAPGQC RLLASLPFVL VASGVTFFLP
210 220 230 240 250
SGAICFTYCR ILLAARKQAV QVASLTTGTA GQALETLQVP RTPRPGMESA
260 270 280 290 300
DSRRLATKHS RKALKASLTL GILLGMFFVT WLPFFVANIA QAVCDCISPG
310 320 330 340 350
LFDVLTWLGY CNSTMNPIIY PLFMRDFKRA LGRFLPCVHC PPEHRPALPP
360 370 380 390 400
PPCGPLTAVP DQASACSRCC LCLCRQTQIQ TPLQGAPRAC SSQPSFCCLE
410 420 430
RPPGTPRHPP GPPLWSTSLS QTLWSLRYGR IHSVPP
Length:436
Mass (Da):46,923
Last modified:November 1, 1995 - v2
Checksum:i6BC00F6A3CBA5FB4
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti57L → V in AAA40618 (PubMed:7680751).Curated1
Sequence conflicti336 – 436PCVHC…HSVPP → HASTVPRSTGQPCLPLHVDL SQRCQTRPQLQQVLALPLPP NSDSDSASGGTSGLQLTAQL LLPGEATRDPPPPTRATTVV NFFVTDSVEPEIRPHPLSSP VN in AAA40618 (PubMed:7680751).CuratedAdd BLAST101

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L03202 mRNA. Translation: AAA40618.1.
S62043 mRNA. Translation: AAB26908.1.
L19656 mRNA. Translation: AAA40611.1.
PIRiI57942.
JN0591.
UniGeneiRn.10552.

Genome annotation databases

EnsembliENSRNOT00000070865; ENSRNOP00000064366; ENSRNOG00000049761.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L03202 mRNA. Translation: AAA40618.1.
S62043 mRNA. Translation: AAB26908.1.
L19656 mRNA. Translation: AAA40611.1.
PIRiI57942.
JN0591.
UniGeneiRn.10552.

3D structure databases

ProteinModelPortaliP31388.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi249039. 1 interactor.
MINTiMINT-7214733.
STRINGi10116.ENSRNOP00000064366.

Chemistry databases

BindingDBiP31388.
ChEMBLiCHEMBL3372.
GuidetoPHARMACOLOGYi11.

Protein family/group databases

GPCRDBiSearch...

PTM databases

iPTMnetiP31388.
PhosphoSitePlusiP31388.

Proteomic databases

PaxDbiP31388.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000070865; ENSRNOP00000064366; ENSRNOG00000049761.

Organism-specific databases

RGDi62044. Htr6.

Phylogenomic databases

eggNOGiKOG3656. Eukaryota.
ENOG410XRW9. LUCA.
GeneTreeiENSGT00760000118774.
HOVERGENiHBG106962.
InParanoidiP31388.

Enzyme and pathway databases

ReactomeiR-RNO-390666. Serotonin receptors.
R-RNO-418555. G alpha (s) signalling events.

Miscellaneous databases

PROiP31388.

Gene expression databases

BgeeiENSRNOG00000049761.
ExpressionAtlasiP31388. differential.
GenevisibleiP31388. RN.

Family and domain databases

InterProiIPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR00237. GPCRRHODOPSN.
SMARTiSM01381. 7TM_GPCR_Srsx. 1 hit.
[Graphical view]
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry namei5HT6R_RAT
AccessioniPrimary (citable) accession number: P31388
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: November 1, 1995
Last modified: November 30, 2016
This is version 122 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.