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Protein

Protein ATS1

Gene

ATS1

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

May participate in regulatory interactions between microtubules and the cell cycle.

GO - Biological processi

  • budding cell bud growth Source: SGD
  • microtubule-based process Source: SGD
  • microtubule cytoskeleton organization Source: SGD
  • tRNA wobble uridine modification Source: SGD
Complete GO annotation...

Enzyme and pathway databases

BioCyciYEAST:G3O-28832-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein ATS1
Alternative name(s):
Alpha-tubulin suppressor 1
Gene namesi
Name:ATS1
Ordered Locus Names:YAL020C
ORF Names:FUN28, YAL006
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
Proteomesi
  • UP000002311 Componenti: Chromosome I

Organism-specific databases

EuPathDBiFungiDB:YAL020C.
SGDiS000000018. ATS1.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: SGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002066481 – 333Protein ATS1Add BLAST333

Proteomic databases

MaxQBiP31386.
PRIDEiP31386.

Interactioni

Protein-protein interaction databases

BioGridi31746. 90 interactors.
DIPiDIP-7890N.
IntActiP31386. 2 interactors.
MINTiMINT-2786397.

Structurei

Secondary structure

1333
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 8Combined sources6
Beta strandi16 – 19Combined sources4
Beta strandi23 – 29Combined sources7
Beta strandi32 – 34Combined sources3
Beta strandi38 – 43Combined sources6
Beta strandi45 – 52Combined sources8
Beta strandi57 – 62Combined sources6
Beta strandi66 – 68Combined sources3
Beta strandi76 – 82Combined sources7
Beta strandi89 – 94Combined sources6
Beta strandi96 – 103Combined sources8
Beta strandi108 – 112Combined sources5
Beta strandi115 – 121Combined sources7
Beta strandi127 – 129Combined sources3
Beta strandi132 – 137Combined sources6
Beta strandi140 – 145Combined sources6
Beta strandi148 – 155Combined sources8
Beta strandi158 – 163Combined sources6
Beta strandi165 – 176Combined sources12
Beta strandi178 – 180Combined sources3
Beta strandi182 – 187Combined sources6
Beta strandi189 – 196Combined sources8
Beta strandi201 – 207Combined sources7
Helixi214 – 216Combined sources3
Beta strandi217 – 219Combined sources3
Beta strandi224 – 228Combined sources5
Beta strandi231 – 236Combined sources6
Turni237 – 240Combined sources4
Beta strandi241 – 246Combined sources6
Beta strandi263 – 268Combined sources6
Beta strandi270 – 278Combined sources9
Beta strandi281 – 284Combined sources4
Beta strandi287 – 293Combined sources7
Beta strandi296 – 300Combined sources5
Beta strandi311 – 318Combined sources8
Beta strandi321 – 324Combined sources4
Beta strandi326 – 333Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4D4OX-ray2.90A/B/C1-333[»]
4D4PX-ray3.00A/B/C/E/G/H1-333[»]
4D4QX-ray2.40A/B1-333[»]
4X33X-ray1.45B1-333[»]
ProteinModelPortaliP31386.
SMRiP31386.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati1 – 53RCC1 1Add BLAST53
Repeati55 – 104RCC1 2Add BLAST50
Repeati146 – 197RCC1 3Add BLAST52
Repeati286 – 333RCC1 4Add BLAST48

Sequence similaritiesi

Contains 4 RCC1 repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000163478.
InParanoidiP31386.
KOiK15462.
OMAiKIACGGN.
OrthoDBiEOG092C4KP7.

Family and domain databases

Gene3Di2.130.10.30. 2 hits.
InterProiIPR009091. RCC1/BLIP-II.
IPR000408. Reg_chr_condens.
[Graphical view]
PfamiPF00415. RCC1. 1 hit.
[Graphical view]
PRINTSiPR00633. RCCNDNSATION.
SUPFAMiSSF50985. SSF50985. 1 hit.
PROSITEiPS00626. RCC1_2. 1 hit.
PS50012. RCC1_3. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31386-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCVYAFGSN GQRQLGLGHD EDMDTPQRSV PGDDGAIVRK IACGGNHSVM
60 70 80 90 100
LTNDGNLVGC GDNRRGELDS AQALRQVHDW RPVEVPAPVV DVACGWDTTV
110 120 130 140 150
IVDADGRVWQ RGGGCYEFTQ QHVPLNSNDE RIAVYGCFQN FVVVQGTRVY
160 170 180 190 200
GWGSNTKCQL QEPKSRSLKE PVLVYDTGSV AVDYVAMGKD FMVIVDEGGR
210 220 230 240 250
IVHASGRLPT GFELKQQQKR HNLVVLCMWT SIHLWNARLN TVESFGRGTH
260 270 280 290 300
SQLFPQERLD FPIVGVATGS EHGILTTANQ EGKSHCYNVY CWGWGEHGNC
310 320 330
GPQKGSQPGL QLVGQYSGKP RVFGGCATTW IVL
Length:333
Mass (Da):36,467
Last modified:July 27, 2011 - v2
Checksum:i3C6F4BE180479096
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti305G → A no nucleotide entry (PubMed:8458570).Curated1
Sequence conflicti305G → A no nucleotide entry (PubMed:8144453).Curated1
Sequence conflicti305G → A in AAC04937 (PubMed:7731988).Curated1
Sequence conflicti305G → A no nucleotide entry (PubMed:1561836).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L05146 Genomic DNA. Translation: AAC04937.1.
BK006935 Genomic DNA. Translation: DAA06968.2.
PIRiS36714.
RefSeqiNP_009382.2. NM_001178165.2.

Genome annotation databases

EnsemblFungiiYAL020C; YAL020C; YAL020C.
GeneIDi851213.
KEGGisce:YAL020C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L05146 Genomic DNA. Translation: AAC04937.1.
BK006935 Genomic DNA. Translation: DAA06968.2.
PIRiS36714.
RefSeqiNP_009382.2. NM_001178165.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4D4OX-ray2.90A/B/C1-333[»]
4D4PX-ray3.00A/B/C/E/G/H1-333[»]
4D4QX-ray2.40A/B1-333[»]
4X33X-ray1.45B1-333[»]
ProteinModelPortaliP31386.
SMRiP31386.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31746. 90 interactors.
DIPiDIP-7890N.
IntActiP31386. 2 interactors.
MINTiMINT-2786397.

Proteomic databases

MaxQBiP31386.
PRIDEiP31386.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYAL020C; YAL020C; YAL020C.
GeneIDi851213.
KEGGisce:YAL020C.

Organism-specific databases

EuPathDBiFungiDB:YAL020C.
SGDiS000000018. ATS1.

Phylogenomic databases

HOGENOMiHOG000163478.
InParanoidiP31386.
KOiK15462.
OMAiKIACGGN.
OrthoDBiEOG092C4KP7.

Enzyme and pathway databases

BioCyciYEAST:G3O-28832-MONOMER.

Miscellaneous databases

PROiP31386.

Family and domain databases

Gene3Di2.130.10.30. 2 hits.
InterProiIPR009091. RCC1/BLIP-II.
IPR000408. Reg_chr_condens.
[Graphical view]
PfamiPF00415. RCC1. 1 hit.
[Graphical view]
PRINTSiPR00633. RCCNDNSATION.
SUPFAMiSSF50985. SSF50985. 1 hit.
PROSITEiPS00626. RCC1_2. 1 hit.
PS50012. RCC1_3. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiATS1_YEAST
AccessioniPrimary (citable) accession number: P31386
Secondary accession number(s): D6VPJ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 27, 2011
Last modified: November 2, 2016
This is version 132 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome I
    Yeast (Saccharomyces cerevisiae) chromosome I: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.