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P31367

- PO6F1_DANRE

UniProt

P31367 - PO6F1_DANRE

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Protein

POU domain, class 6, transcription factor 1

Gene
pou6f1, pou[c], pouc
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Transcription factor that binds with high affinity to the motif 5'-TAATGARAT-3'.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi543 – 60260HomeoboxAdd
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
POU domain, class 6, transcription factor 1
Alternative name(s):
POU domain protein C
Short name:
POU[C]
Short name:
ZfPOU[C]
Gene namesi
Name:pou6f1
Synonyms:pou[c], pouc
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 23

Organism-specific databases

ZFINiZDB-GENE-980526-530. pou6f1.

Subcellular locationi

Nucleus Inferred

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 610610POU domain, class 6, transcription factor 1PRO_0000100770Add
BLAST

Expressioni

Tissue specificityi

Ubiquitously expressed during embryogenesis.1 Publication

Gene expression databases

BgeeiP31367.

Structurei

3D structure databases

ProteinModelPortaliP31367.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini448 – 52275POU-specificAdd
BLAST

Sequence similaritiesi

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG241882.
GeneTreeiENSGT00750000117373.
HOGENOMiHOG000063659.
InParanoidiP31367.
KOiK09368.
OMAiSYFEKNA.
OrthoDBiEOG7353Z3.
PhylomeDBiP31367.
TreeFamiTF350705.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.260.40. 1 hit.
InterProiIPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR010982. Lambda_DNA-bd_dom.
IPR013847. POU.
IPR000327. POU_specific.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF00157. Pou. 1 hit.
[Graphical view]
PRINTSiPR00028. POUDOMAIN.
SMARTiSM00389. HOX. 1 hit.
SM00352. POU. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
PROSITEiPS50071. HOMEOBOX_2. 1 hit.
PS00035. POU_1. 1 hit.
PS00465. POU_2. 1 hit.
PS51179. POU_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31367-1 [UniParc]FASTAAdd to Basket

« Hide

MDTEDLPANN APLTVNEQLL GSCTLKFPAQ DAQVIVMSGQ ETIRVLEVEV    50
DTALSSAGAA ESGGDEEGSG QSLEATEEAQ LDGPVTTSST TAVTVEVSAP 100
VVQTVVSKAA ISVSPAQQTS VPITVQACPQ VLTQDGLASL MTGMLAQQSS 150
LGQPLLIPLS MAGSVGGQGG LAVLTLPTAT VATLPGLAAA SPAGGLLKLP 200
FAGLQAATVL NSVQTQLQAP AQAVLQPQMS ALQAMQQTQT TAATTASIVQ 250
KASEPSVSVA TLQTAGLSIN PAIISAASLG AQPQFISSLT TTPIITSAMS 300
NVAGLTSQLI TNAQGQVIGT LPLLVNPASL AGAAAASALP AQGLQVQTVA 350
PQLLLNSQGQ IIATIGNGPT AAIPSTASVL PKATVPLTLT KTTTQGPVGK 400
VAPSKVIIAP QPSVVKPVTS LTAAGVIACG EMPTVGQLVN KPSAVKDEEA 450
INLEEIREFA KNFKIRRLSL GLTQTQVGQA LTATEGPAYS QSAICRFEKL 500
DITPKSAQKL KPVLERWLAE AELWNQKGQQ NLMEFVGGEP SKKRKRRTSF 550
TPQAIEVLNT YFEKNSLPTG QEITEIAKEL NYDREVVRVW FCNRRQTLKN 600
TSKINVFQSQ 610
Length:610
Mass (Da):63,124
Last modified:July 1, 1993 - v1
Checksum:i51D7140A6F16DD66
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X68432 mRNA. Translation: CAA48481.1.
BC162134 mRNA. Translation: AAI62134.1.
BC162146 mRNA. Translation: AAI62146.1.
PIRiS30234.
RefSeqiNP_571188.1. NM_131113.1.
UniGeneiDr.75078.

Genome annotation databases

EnsembliENSDART00000011925; ENSDARP00000003648; ENSDARG00000011570.
ENSDART00000130338; ENSDARP00000111302; ENSDARG00000011570.
GeneIDi30334.
KEGGidre:30334.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X68432 mRNA. Translation: CAA48481.1 .
BC162134 mRNA. Translation: AAI62134.1 .
BC162146 mRNA. Translation: AAI62146.1 .
PIRi S30234.
RefSeqi NP_571188.1. NM_131113.1.
UniGenei Dr.75078.

3D structure databases

ProteinModelPortali P31367.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000011925 ; ENSDARP00000003648 ; ENSDARG00000011570 .
ENSDART00000130338 ; ENSDARP00000111302 ; ENSDARG00000011570 .
GeneIDi 30334.
KEGGi dre:30334.

Organism-specific databases

CTDi 5463.
ZFINi ZDB-GENE-980526-530. pou6f1.

Phylogenomic databases

eggNOGi NOG241882.
GeneTreei ENSGT00750000117373.
HOGENOMi HOG000063659.
InParanoidi P31367.
KOi K09368.
OMAi SYFEKNA.
OrthoDBi EOG7353Z3.
PhylomeDBi P31367.
TreeFami TF350705.

Miscellaneous databases

NextBioi 20806766.
PROi P31367.

Gene expression databases

Bgeei P31367.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
1.10.260.40. 1 hit.
InterProi IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR010982. Lambda_DNA-bd_dom.
IPR013847. POU.
IPR000327. POU_specific.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
PF00157. Pou. 1 hit.
[Graphical view ]
PRINTSi PR00028. POUDOMAIN.
SMARTi SM00389. HOX. 1 hit.
SM00352. POU. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
SSF47413. SSF47413. 1 hit.
PROSITEi PS50071. HOMEOBOX_2. 1 hit.
PS00035. POU_1. 1 hit.
PS00465. POU_2. 1 hit.
PS51179. POU_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Zebrafish pou[c]: a divergent POU family gene ubiquitously expressed during embryogenesis."
    Johansen T., Moens U., Holm T., Fjose A., Krauss S.
    Nucleic Acids Res. 21:475-483(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY.
    Strain: NC-1.
    Tissue: Embryonic liver.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiPO6F1_DANRE
AccessioniPrimary (citable) accession number: P31367
Secondary accession number(s): B3DFR1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: April 16, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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