Reviewed,
UniProtKB/Swiss-Prot P31327 (CPSM_HUMAN)
Last modified
July 7, 2009.
Version 113.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Carbamoyl-phosphate synthase [ammonia], mitochondrial EC=6.3.4.16 Alternative name(s): Carbamoyl-phosphate synthetase I Short name=CPSase I | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Complete proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1500 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Involved in the urea cycle of ureotelic animals where the enzyme plays an important role in removing excess ammonia from the cell. |
| Catalytic activity | 2 ATP + NH3 + CO2 + H2O = 2 ADP + phosphate + carbamoyl phosphate. |
| Enzyme regulation | Requires N-acetylglutamate as an allosteric activator. |
| Subcellular location | |
| Tissue specificity | Primarily in the liver and small intestine. |
| Domain | The type-1 glutamine amidotransferase domain is defective. |
| Involvement in disease | Defects in CPS1 are the cause of carbamoyl phosphate synthetase 1 deficiency (CPS1D) [MIM:237300]. CPS1D is an autosomal recessive disorder of the urea cycle causing hyperammonemia. Clinical features include protein intolerance, intermittent ataxia, seizures, lethargy, developmental delay and mental retardation. Ref.2 Ref.5 Ref.6 Ref.9 Ref.11 Ref.12 Defects in CPS1 are associated with susceptibility to familial persistent pulmonary hypertension of the newborn [MIM:265380]; also called congenital alveolar capillary dysplasia or CACD. Failure of the transition to a cardiorespiratory circulation at birth results in persistent pulmonary hypertension of the newborn. Characterized by elevated pulmonary vascular resistance with extrapulmonary right-to-left shunting of blood across the patent ductus arteriosus or the foramen ovale, persistent pulmonary hypertension can cause life-threatening hypoxemia in newborn infants. Transitional pulmonary hypertension occurs in 1.9 of every 1000 newborn infants and is associated with a mortality rate of 11 percent. |
| Sequence similarities | Contains 2 ATP-grasp domains. Contains 1 glutamine amidotransferase type-1 domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ARAF | P10398 | 3 | EBI-536811,EBI-365961 | |
| RAF1 | P04049 | 2 | EBI-536811,EBI-365996 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P31327-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P31327-2) The sequence of this isoform differs from the canonical sequence as follows: 1-451: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – 38 | 38 | Mitochondrion By similarity | ||||||||||||||||||||||||||||||
| Chain | 39 – 1500 | 1462 | Carbamoyl-phosphate synthase [ammonia], mitochondrial | PRO_0000029897 | |||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||
| Domain | 219 – 404 | 186 | Glutamine amidotransferase type-1 | ||||||||||||||||||||||||||||||
| Domain | 551 – 743 | 193 | ATP-grasp 1 | ||||||||||||||||||||||||||||||
| Domain | 1093 – 1284 | 192 | ATP-grasp 2 | ||||||||||||||||||||||||||||||
| Region | 39 – 218 | 180 | Anthranilate phosphoribosyltransferase homolog | ||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||
| Modified residue | 55 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 119 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 287 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 527 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 841 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 892 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 898 | 1 | Phosphoserine By similarity | ||||||||||||||||||||||||||||||
| Modified residue | 1291 | 1 | N6-acetyllysine By similarity | ||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 451 | 451 | Missing in isoform 2. | VSP_009332 | |||||||||||||||||||||||||||||
| Natural variant | 337 | 1 | H → R in CPS1D. dbSNP rs28940283. Ref.9 | VAR_014077 | |||||||||||||||||||||||||||||
| Natural variant | 344 | 1 | T → A: dbSNP rs1047883. Ref.2 Ref.3 | VAR_006834 | |||||||||||||||||||||||||||||
| Natural variant | 457 | 1 | V → G in CPS1D. Ref.5 | VAR_017562 | |||||||||||||||||||||||||||||
| Natural variant | 544 | 1 | T → M in CPS1D. Ref.2 | VAR_006835 | |||||||||||||||||||||||||||||
| Natural variant | 810 | 1 | Q → R in CPS1D. Ref.5 | VAR_017563 | |||||||||||||||||||||||||||||
| Natural variant | 843 | 1 | L → S in CPS1D. Ref.6 Ref.12 | VAR_017564 | |||||||||||||||||||||||||||||
| Natural variant | 850 | 1 | R → H in CPS1D. Ref.11 | VAR_030675 | |||||||||||||||||||||||||||||
| Natural variant | 875 | 1 | K → E in CPS1D. Ref.6 Ref.12 | VAR_017565 | |||||||||||||||||||||||||||||
| Natural variant | 918 | 1 | S → P in CPS1D. Ref.11 | VAR_030676 | |||||||||||||||||||||||||||||
| Natural variant | 1266 | 1 | F → S: dbSNP rs1047886. Ref.1 | VAR_017566 | |||||||||||||||||||||||||||||
| Natural variant | 1283 | 1 | M → L: dbSNP rs1047887. Ref.1 | VAR_017567 | |||||||||||||||||||||||||||||
| Natural variant | 1376 | 1 | G → S Ref.3 | VAR_017568 | |||||||||||||||||||||||||||||
| Natural variant | 1406 | 1 | T → N 30-40% higher activity; risk factor for persistent pulmonary hypertension of the newborn. dbSNP rs1047891. Ref.5 Ref.3 Ref.1 Ref.10 | VAR_017569 | |||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||
| Sequence conflict | 111 | 1 | A → S in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 279 | 1 | R → Q in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 338 | 1 | G → C in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 718 – 722 | 5 | RLSRS → KMSPN in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 729 | 1 | A → T in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 749 | 1 | E → G in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 912 | 1 | F → L in CAE45707. Ref.6 | ||||||||||||||||||||||||||||||
| Sequence conflict | 1161 – 1162 | 2 | EH → AT in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 1204 – 1205 | 2 | GD → EN in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 1254 | 1 | I → N in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
| Sequence conflict | 1303 | 1 | A → V in BAA14328. Ref.1 | ||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||
| Helix | 1344 – 1350 | 7 | |||||||||||||||||||||||||||||||
| Beta strand | 1360 – 1365 | 6 | |||||||||||||||||||||||||||||||
| Helix | 1368 – 1370 | 3 | |||||||||||||||||||||||||||||||
| Helix | 1371 – 1382 | 12 | |||||||||||||||||||||||||||||||
| Turn | 1383 – 1385 | 3 | |||||||||||||||||||||||||||||||
| Beta strand | 1387 – 1391 | 5 | |||||||||||||||||||||||||||||||
| Helix | 1392 – 1400 | 9 | |||||||||||||||||||||||||||||||
| Beta strand | 1406 – 1408 | 3 | |||||||||||||||||||||||||||||||
| Helix | 1411 – 1413 | 3 | |||||||||||||||||||||||||||||||
| Helix | 1423 – 1428 | 6 | |||||||||||||||||||||||||||||||
| Beta strand | 1434 – 1437 | 4 | |||||||||||||||||||||||||||||||
| Helix | 1443 – 1445 | 3 | |||||||||||||||||||||||||||||||
| Helix | 1446 – 1458 | 13 | |||||||||||||||||||||||||||||||
| Helix | 1467 – 1475 | 9 | |||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Cloning and sequence of a cDNA encoding human carbamyl phosphate synthetase I: molecular analysis of hyperammonemia." Haraguchi Y., Uchino T., Takiguchi M., Endo F., Mori M., Matsuda I. Gene 107:335-340(1991) [PubMed: 1840546] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS SER-1266; LEU-1283 AND ASN-1406. Tissue: Liver. |
| [2] | "Prenatal diagnosis of carbamoyl phosphate synthetase I deficiency by identification of a missense mutation in CPS1." Finckh U., Kohlschuetter A., Schaefer H., Sperhake K., Colombo J.-P., Gal A. Hum. Mutat. 12:206-211(1998) [PubMed: 9711878] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT CPS1D MET-544, VARIANT ALA-344. Tissue: Liver. |
| [3] | "Characterization of genomic structure and polymorphisms in the human carbamyl phosphate synthetase I gene." Summar M.L., Hall L.D., Eeds A.M., Hutcheson H.B., Kuo A.N., Willis A.S., Rubio V., Arvin M.K., Schofield J.P., Dawson E.P. Gene 311:51-57(2003) [PubMed: 12853138] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS ALA-344; SER-1376 AND ASN-1406. |
| [4] | "Cloning of an isoform of CPS1 gene related to spermatogenesis." Huo R., Zhu H., Huang X.Y., Xu Z.Y., Lu L., Xu M., Yin L.L., Li J.M., Zhou Z.M., Sha J.H. Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). Tissue: Testis. |
| [5] | "Structural organization of the human carbamyl phosphate synthetase I gene (CPS1) and identification of two novel genetic lesions." Funghini S., Donati M.A., Pasquini E., Zammarchi E., Morrone A. Hum. Mutat. 22:340-341(2003) [PubMed: 12955727] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1), VARIANTS CPS1D GLY-457 AND ARG-810, VARIANT ASN-1406. |
| [6] | "Gene structure of human carbamylphosphate synthetase 1 and novel mutations in patients with neonatal onset." Haeberle J., Schmidt E., Pauli S., Rapp B., Christensen E., Wermuth B., Koch H.G. Hum. Mutat. 21:444-444(2003) [PubMed: 12655559] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1), VARIANTS CPS1D SER-843 AND GLU-875. |
| [7] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Blocker H., Heubner D., Hoerlein A., Michel G., Wedler H., Kohrer K., Ottenwalder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 795-1500. Tissue: Small intestine. |
| [8] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [9] | "Novel mutations (H337R and 238-362del) in the CPS1 gene cause carbamoyl phosphate synthetase I deficiency." Aoshima T., Kajita M., Sekido Y., Kikuchi S., Yasuda I., Saheki T., Watanabe K., Shimokata K., Niwa T. Hum. Hered. 52:99-101(2001) [PubMed: 11474210] [Abstract] Cited for: VARIANT CPS1D ARG-337. |
| [10] | "Neonatal pulmonary hypertension -- urea-cycle intermediates, nitric oxide production, and carbamoyl-phosphate synthetase function." Pearson D.L., Dawling S., Walsh W.F., Haines J.L., Christman B.W., Bazyk A., Scott N., Summar M.L. N. Engl. J. Med. 344:1832-1838(2001) [PubMed: 11407344] [Abstract] Cited for: VARIANT ASN-1406. |
| [11] | "Mutational analysis of carbamoylphosphate synthetase I deficiency in three Japanese patients." Wakutani Y., Nakayasu H., Takeshima T., Adachi M., Kawataki M., Kihira K., Sawada H., Bonno M., Yamamoto H., Nakashima K. J. Inherit. Metab. Dis. 27:787-788(2004) [PubMed: 15617192] [Abstract] Cited for: VARIANTS CPS1D HIS-850 AND PRO-918. |
| [12] | "Genetic approach to prenatal diagnosis in urea cycle defects." Haeberle J., Koch H.G. Prenat. Diagn. 24:378-383(2004) [PubMed: 15164414] [Abstract] Cited for: VARIANTS CPS1D SER-843 AND GLU-875. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| D90282 mRNA. Translation: BAA14328.1. Y15793 mRNA. Translation: CAA75785.1. AF154830 mRNA. Translation: AAD38072.1. AY317138 mRNA. Translation: AAP84318.1. AY167007 AY167006 Genomic DNA. Translation: AAO31763.1. AF536523 Genomic DNA. Translation: AAN77181.1. BX640601 mRNA. Translation: CAE45707.1. | |||||||||||||
| IPI | IPI00011062. IPI00397498. | ||||||||||||
| PIR | JQ1348. | ||||||||||||
| RefSeq | NP_001116105.1. NP_001116106.1. NP_001866.2. | ||||||||||||
| UniGene | Hs.149252 | ||||||||||||
3D structure databases | |||||||||||||
| |||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | P31327. 2 interactions. | ||||||||||||
Protein family/group databases | |||||||||||||
| MEROPS | C26.951. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P31327. | ||||||||||||
Proteomic databases | |||||||||||||
| PRIDE | P31327. | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENSG00000021826. Homo sapiens. [Contig view] | ||||||||||||
| GeneID | 1373. | ||||||||||||
| KEGG | hsa:1373. | ||||||||||||
| UCSC | uc002vee.2. human. uc010fus.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| GeneCards | GC02P211050. | ||||||||||||
| HGNC | HGNC:2323. CPS1. | ||||||||||||
| HPA | CAB003781. | ||||||||||||
| MIM | 237300. phenotype. 265380. phenotype. 608307. gene. | ||||||||||||
| Orphanet | 147. Carbamoylphosphate synthetase deficiency. | ||||||||||||
| PharmGKB | PA26840. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| HOVERGEN | P31327. | ||||||||||||
| OMA | P31327. MDLSTKA. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BioCyc | MetaCyc:MON-11364. | ||||||||||||
| BRENDA | 6.3.4.16. 247. | ||||||||||||
| Reactome | REACT_13. Metabolism of amino acids. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P31327. | ||||||||||||
| Bgee | P31327. | ||||||||||||
| CleanEx | HS_CPS1. | ||||||||||||
| GermOnline | ENSG00000021826. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR011761. ATP-grasp. IPR013816. ATP_grasp_subdomain_2. IPR001317. CarbamoylP_synth_GATase. IPR005483. CarbamoylP_synth_lsu. IPR005479. CarbamoylP_synth_lsu_ATP-bd. IPR006275. CarbamoylP_synth_lsu_Gln-dep. IPR005481. CarbamoylP_synth_lsu_N. IPR005480. CarbamoylP_synth_lsu_oligo. IPR006274. CarbamoylP_synth_ssu. IPR002474. CarbamoylP_synth_ssu_N. IPR017926. GATASE_1. IPR000991. GATase_class1_C. IPR011607. MGS. IPR013817. Pre-ATP_grasp. [Graphical view] | ||||||||||||
| Gene3D | G3DSA:3.30.470.20. ATP_grasp_subdomain_2. 2 hits. G3DSA:3.40.50.20. Pre-ATP_grasp. 1 hit. | ||||||||||||
| Pfam | PF00289. CPSase_L_chain. 2 hits. PF02786. CPSase_L_D2. 2 hits. PF02787. CPSase_L_D3. 1 hit. PF00988. CPSase_sm_chain. 1 hit. PF00117. GATase. 1 hit. PF02142. MGS. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00098. CPSASE. PR00099. CPSGATASE. | ||||||||||||
| TIGRFAMs | TIGR01369. CPSaseII_lrg. 1 hit. TIGR01368. CPSaseIIsmall. 1 hit. | ||||||||||||
| PROSITE | PS50975. ATP_GRASP. 2 hits. PS00866. CPSASE_1. 2 hits. PS00867. CPSASE_2. 2 hits. PS51273. GATASE_TYPE_1. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other Resources | |||||||||||||
| NextBio | 5565. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | CPSM_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P31327 Secondary accession number(s): O43774, Q7Z5I5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


