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P31260

- HXA10_HUMAN

UniProt

P31260 - HXA10_HUMAN

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Protein

Homeobox protein Hox-A10

Gene

HOXA10

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Binds to the DNA sequence 5'-AA[AT]TTTTATTAC-3'.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi336 – 39560HomeoboxPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. histone deacetylase binding Source: UniProtKB
  2. RNA polymerase II core promoter proximal region sequence-specific DNA binding Source: NTNU_SB
  3. RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription Source: NTNU_SB

GO - Biological processi

  1. anterior/posterior pattern specification Source: Ensembl
  2. embryonic limb morphogenesis Source: Ensembl
  3. male gonad development Source: Ensembl
  4. multicellular organismal development Source: ProtInc
  5. positive regulation of transcription from RNA polymerase II promoter Source: NTNU_SB
  6. proximal/distal pattern formation Source: Ensembl
  7. single fertilization Source: Ensembl
  8. skeletal system development Source: Ensembl
  9. spermatogenesis Source: ProtInc
  10. uterus development Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox protein Hox-A10
Alternative name(s):
Homeobox protein Hox-1.8
Homeobox protein Hox-1H
PL
Gene namesi
Name:HOXA10
Synonyms:HOX1H
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 7

Organism-specific databases

HGNCiHGNC:5100. HOXA10.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB
  2. nucleus Source: UniProtKB
  3. transcription factor complex Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA29377.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 410410Homeobox protein Hox-A10PRO_0000200090Add
BLAST

Proteomic databases

MaxQBiP31260.
PaxDbiP31260.
PRIDEiP31260.

PTM databases

PhosphoSiteiP31260.

Expressioni

Gene expression databases

BgeeiP31260.
CleanExiHS_HOXA10.
ExpressionAtlasiP31260. baseline and differential.
GenevestigatoriP31260.

Organism-specific databases

HPAiCAB019384.

Interactioni

Subunit structurei

Interacts with SIRT2; the interaction is direct.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
SPI1P179472EBI-2293516,EBI-2293548

Protein-protein interaction databases

BioGridi109446. 9 interactions.
IntActiP31260. 3 interactions.
MINTiMINT-243009.
STRINGi9606.ENSP00000283921.

Structurei

3D structure databases

ProteinModelPortaliP31260.
SMRiP31260. Positions 337-395.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi43 – 5614Poly-GlyAdd
BLAST
Compositional biasi95 – 10612Poly-GlyAdd
BLAST
Compositional biasi133 – 1375Poly-Pro
Compositional biasi141 – 15010Poly-Pro
Compositional biasi225 – 2328Poly-Gly
Compositional biasi273 – 2764Poly-Pro

Sequence similaritiesi

Belongs to the Abd-B homeobox family.Curated
Contains 1 homeobox DNA-binding domain.PROSITE-ProRule annotation

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG248153.
GeneTreeiENSGT00760000118834.
HOGENOMiHOG000231182.
HOVERGENiHBG052934.
InParanoidiP31260.
KOiK17443.
OMAiCRMEPPE.
OrthoDBiEOG72JWGM.
PhylomeDBiP31260.
TreeFamiTF317819.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: P31260-1) [UniParc]FASTAAdd to Basket

Also known as: PL1

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSARKGYLLP SPNYPTTMSC SESPAANSFL VDSLISSGRG EAGGGGGGAG
60 70 80 90 100
GGGGGGYYAH GGVYLPPAAD LPYGLQSCGL FPTLGGKRNE AASPGSGGGG
110 120 130 140 150
GGLGPGAHGY GPSPIDLWLD APRSCRMEPP DGPPPPPQQQ PPPPPQPPQP
160 170 180 190 200
APQATSCSFA QNIKEESSYC LYDSADKCPK VSATAAELAP FPRGPPPDGC
210 220 230 240 250
ALGTSSGVPV PGYFRLSQAY GTAKGYGSGG GGAQQLGAGP FPAQPPGRGF
260 270 280 290 300
DLPPALASGS ADAARKERAL DSPPPPTLAC GSGGGSQGDE EAHASSSAAE
310 320 330 340 350
ELSPAPSESS KASPEKDSLG NSKGENAANW LTAKSGRKKR CPYTKHQTLE
360 370 380 390 400
LEKEFLFNMY LTRERRLEIS RSVHLTDRQV KIWFQNRRMK LKKMNRENRI
410
RELTANFNFS
Length:410
Mass (Da):42,414
Last modified:April 20, 2010 - v3
Checksum:iE9544C35145FE7A4
GO
Isoform 2 (identifier: P31260-2) [UniParc]FASTAAdd to Basket

Also known as: PL2

The sequence of this isoform differs from the canonical sequence as follows:
     1-316: Missing.
     317-319: DSL → MCQ

Show »
Length:94
Mass (Da):11,452
Checksum:i1F5C2E451B309ED2
GO

Sequence cautioni

The sequence CAB86198.1 differs from that shown. Reason: Frameshift at several positions.
The sequence AAB96917.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.
The sequence AAH13971.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti20 – 201C → S in CAB86198. (PubMed:1676505)Curated
Sequence conflicti75 – 751L → W in CAB86198. (PubMed:1676505)Curated
Sequence conflicti86 – 861G → R in CAB86198. (PubMed:1676505)Curated
Sequence conflicti153 – 1542QA → HR in CAB86198. (PubMed:1676505)Curated
Sequence conflicti192 – 1921P → R in CAB86198. (PubMed:1676505)Curated
Sequence conflicti216 – 2161L → P in CAB86198. (PubMed:1676505)Curated
Sequence conflicti221 – 2211G → A in CAB86198. (PubMed:1676505)Curated
Sequence conflicti231 – 2311G → C in CAB86198. (PubMed:1676505)Curated
Sequence conflicti234 – 2352QQ → HE in CAB86198. (PubMed:1676505)Curated
Sequence conflicti241 – 2411F → V in CAB86198. (PubMed:1676505)Curated
Sequence conflicti248 – 2481R → G in CAB86198. (PubMed:1676505)Curated
Sequence conflicti260 – 2612SA → GS in CAB86198. (PubMed:1676505)Curated
Sequence conflicti292 – 2921A → G in CAB86198. (PubMed:1676505)Curated
Sequence conflicti295 – 2951S → R in CAB86198. (PubMed:1676505)Curated
Sequence conflicti349 – 3491L → S in AAD14031. (PubMed:7906121)Curated
Sequence conflicti351 – 3511L → F in AAD14031. (PubMed:7906121)Curated
Sequence conflicti356 – 3561L → H in AAD14030. (PubMed:7906121)Curated
Sequence conflicti359 – 3591M → R in AAD14030. (PubMed:7906121)Curated
Sequence conflicti364 – 3641E → R in AAD14030. (PubMed:7906121)Curated
Sequence conflicti367 – 3671L → I in AAD14030. (PubMed:7906121)Curated
Sequence conflicti370 – 3745SRSVH → ANALC in AAD14030. (PubMed:7906121)Curated
Sequence conflicti377 – 3771D → E in AAD14030. (PubMed:7906121)Curated
Sequence conflicti380 – 3801V → S in AAD14030. (PubMed:7906121)Curated
Sequence conflicti387 – 3871R → P in AAD14030. (PubMed:7906121)Curated
Sequence conflicti387 – 3871R → P in AAD14031. (PubMed:7906121)Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 316316Missing in isoform 2. 2 PublicationsVSP_002384Add
BLAST
Alternative sequencei317 – 3193DSL → MCQ in isoform 2. 2 PublicationsVSP_002385

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58430 Genomic DNA. Translation: CAB86198.1. Frameshift.
AF040714 Genomic DNA. Translation: AAB96917.1. Different initiation.
AK312450 mRNA. Translation: BAG35357.1.
AC004080 Genomic DNA. No translation available.
CH471073 Genomic DNA. Translation: EAW93885.1.
BC013971 mRNA. Translation: AAH13971.1. Different initiation.
BC071843 mRNA. Translation: AAH71843.1.
BC094807 mRNA. Translation: AAH94807.1.
M30599 mRNA. Translation: AAA36006.1.
S69027 mRNA. Translation: AAD14030.1.
S69029 mRNA. Translation: AAD14031.1.
CCDSiCCDS5410.2. [P31260-1]
PIRiI65264.
I65265.
S26402.
S28814.
RefSeqiNP_061824.3. NM_018951.3. [P31260-1]
UniGeneiHs.110637.
Hs.659350.

Genome annotation databases

EnsembliENST00000283921; ENSP00000283921; ENSG00000253293. [P31260-1]
ENST00000396344; ENSP00000379633; ENSG00000253293. [P31260-2]
GeneIDi3206.
KEGGihsa:3206.
UCSCiuc011jzm.2. human. [P31260-1]

Polymorphism databases

DMDMi294862509.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X58430 Genomic DNA. Translation: CAB86198.1 . Frameshift.
AF040714 Genomic DNA. Translation: AAB96917.1 . Different initiation.
AK312450 mRNA. Translation: BAG35357.1 .
AC004080 Genomic DNA. No translation available.
CH471073 Genomic DNA. Translation: EAW93885.1 .
BC013971 mRNA. Translation: AAH13971.1 . Different initiation.
BC071843 mRNA. Translation: AAH71843.1 .
BC094807 mRNA. Translation: AAH94807.1 .
M30599 mRNA. Translation: AAA36006.1 .
S69027 mRNA. Translation: AAD14030.1 .
S69029 mRNA. Translation: AAD14031.1 .
CCDSi CCDS5410.2. [P31260-1 ]
PIRi I65264.
I65265.
S26402.
S28814.
RefSeqi NP_061824.3. NM_018951.3. [P31260-1 ]
UniGenei Hs.110637.
Hs.659350.

3D structure databases

ProteinModelPortali P31260.
SMRi P31260. Positions 337-395.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 109446. 9 interactions.
IntActi P31260. 3 interactions.
MINTi MINT-243009.
STRINGi 9606.ENSP00000283921.

PTM databases

PhosphoSitei P31260.

Polymorphism databases

DMDMi 294862509.

Proteomic databases

MaxQBi P31260.
PaxDbi P31260.
PRIDEi P31260.

Protocols and materials databases

DNASUi 3206.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000283921 ; ENSP00000283921 ; ENSG00000253293 . [P31260-1 ]
ENST00000396344 ; ENSP00000379633 ; ENSG00000253293 . [P31260-2 ]
GeneIDi 3206.
KEGGi hsa:3206.
UCSCi uc011jzm.2. human. [P31260-1 ]

Organism-specific databases

CTDi 3206.
GeneCardsi GC07M027210.
HGNCi HGNC:5100. HOXA10.
HPAi CAB019384.
MIMi 142957. gene.
neXtProti NX_P31260.
PharmGKBi PA29377.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG248153.
GeneTreei ENSGT00760000118834.
HOGENOMi HOG000231182.
HOVERGENi HBG052934.
InParanoidi P31260.
KOi K17443.
OMAi CRMEPPE.
OrthoDBi EOG72JWGM.
PhylomeDBi P31260.
TreeFami TF317819.

Miscellaneous databases

ChiTaRSi HOXA10. human.
GeneWikii Homeobox_A10.
GenomeRNAii 3206.
NextBioi 12756.
PROi P31260.
SOURCEi Search...

Gene expression databases

Bgeei P31260.
CleanExi HS_HOXA10.
ExpressionAtlasi P31260. baseline and differential.
Genevestigatori P31260.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
[Graphical view ]
PRINTSi PR00024. HOMEOBOX.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A human Hox 1 homeobox gene exhibits myeloid-specific expression of alternative transcripts in human hematopoietic cells."
    Lowney P., Corral J.C., Detmer K., Lebeau M.M., Deaven L., Lawrence H.J., Largman C.
    Nucleic Acids Res. 19:3443-3449(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], ALTERNATIVE SPLICING.
  2. Mi X., Winters J.L., Stevens D.B., Fleischman R.A.
    Submitted (DEC-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Caudate nucleus.
  4. "The DNA sequence of human chromosome 7."
    Hillier L.W., Fulton R.S., Fulton L.A., Graves T.A., Pepin K.H., Wagner-McPherson C., Layman D., Maas J., Jaeger S., Walker R., Wylie K., Sekhon M., Becker M.C., O'Laughlin M.D., Schaller M.E., Fewell G.A., Delehaunty K.D., Miner T.L.
    , Nash W.E., Cordes M., Du H., Sun H., Edwards J., Bradshaw-Cordum H., Ali J., Andrews S., Isak A., Vanbrunt A., Nguyen C., Du F., Lamar B., Courtney L., Kalicki J., Ozersky P., Bielicki L., Scott K., Holmes A., Harkins R., Harris A., Strong C.M., Hou S., Tomlinson C., Dauphin-Kohlberg S., Kozlowicz-Reilly A., Leonard S., Rohlfing T., Rock S.M., Tin-Wollam A.-M., Abbott A., Minx P., Maupin R., Strowmatt C., Latreille P., Miller N., Johnson D., Murray J., Woessner J.P., Wendl M.C., Yang S.-P., Schultz B.R., Wallis J.W., Spieth J., Bieri T.A., Nelson J.O., Berkowicz N., Wohldmann P.E., Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Bedell J.A., Mardis E.R., Clifton S.W., Chissoe S.L., Marra M.A., Raymond C., Haugen E., Gillett W., Zhou Y., James R., Phelps K., Iadanoto S., Bubb K., Simms E., Levy R., Clendenning J., Kaul R., Kent W.J., Furey T.S., Baertsch R.A., Brent M.R., Keibler E., Flicek P., Bork P., Suyama M., Bailey J.A., Portnoy M.E., Torrents D., Chinwalla A.T., Gish W.R., Eddy S.R., McPherson J.D., Olson M.V., Eichler E.E., Green E.D., Waterston R.H., Wilson R.K.
    Nature 424:157-164(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  6. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2-410 (ISOFORM 1).
    Tissue: Muscle and Salivary gland.
  7. "Lineage-restricted expression of homeobox-containing genes in human hematopoietic cell lines."
    Shen W.-F., Largman C., Lowney P., Corral J.C., Detmer K., Hauser C.A., Simonitch T.A., Hack F.M., Lawrence H.J.
    Proc. Natl. Acad. Sci. U.S.A. 86:8536-8540(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 318-400.
  8. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 336-396.
  9. "Homeobox genes: potential candidates for the transcriptional control of the transformed and invasive phenotype."
    Castronovo V., Kusaka M., Chariot A., Gielen J., Sobel M.
    Biochem. Pharmacol. 47:137-143(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 349-387.
  10. "Human histone deacetylase SIRT2 interacts with the homeobox transcription factor HOXA10."
    Bae N.S., Swanson M.J., Vassilev A., Howard B.H.
    J. Biochem. 135:695-700(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH SIRT2.

Entry informationi

Entry nameiHXA10_HUMAN
AccessioniPrimary (citable) accession number: P31260
Secondary accession number(s): O43370
, O43605, Q15949, Q504T1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: April 20, 2010
Last modified: October 29, 2014
This is version 156 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Vertebrate homeotic Hox proteins
    Nomenclature of vertebrate homeotic Hox proteins and list of entries
  2. Human chromosome 7
    Human chromosome 7: entries, gene names and cross-references to MIM
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3