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Protein

UPF0394 inner membrane protein YedE

Gene

yedE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11660-MONOMER.
ECOL316407:JW1914-MONOMER.

Protein family/group databases

TCDBi9.B.102.1.1. the yede/yeee (yede/yeee) family.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0394 inner membrane protein YedE
Gene namesi
Name:yedE
Ordered Locus Names:b1929, JW1914
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11660. yedE.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 13CytoplasmicSequence analysisAdd BLAST13
Transmembranei14 – 34HelicalSequence analysisAdd BLAST21
Topological domaini35 – 78PeriplasmicSequence analysisAdd BLAST44
Transmembranei79 – 99HelicalSequence analysisAdd BLAST21
Topological domaini100 – 111CytoplasmicSequence analysisAdd BLAST12
Transmembranei112 – 132HelicalSequence analysisAdd BLAST21
Topological domaini133PeriplasmicSequence analysis1
Transmembranei134 – 154HelicalSequence analysisAdd BLAST21
Topological domaini155 – 198CytoplasmicSequence analysisAdd BLAST44
Transmembranei199 – 219HelicalSequence analysisAdd BLAST21
Topological domaini220 – 259PeriplasmicSequence analysisAdd BLAST40
Transmembranei260 – 280HelicalSequence analysisAdd BLAST21
Topological domaini281 – 283CytoplasmicSequence analysis3
Transmembranei284 – 304HelicalSequence analysisAdd BLAST21
Topological domaini305 – 363PeriplasmicSequence analysisAdd BLAST59
Transmembranei364 – 384HelicalSequence analysisAdd BLAST21
Topological domaini385 – 401CytoplasmicSequence analysisAdd BLAST17

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001690901 – 401UPF0394 inner membrane protein YedEAdd BLAST401

Proteomic databases

PaxDbiP31064.
PRIDEiP31064.

Interactioni

Protein-protein interaction databases

BioGridi4261058. 169 interactors.
DIPiDIP-11839N.
IntActiP31064. 1 interactor.
MINTiMINT-1246874.
STRINGi511145.b1929.

Structurei

3D structure databases

ProteinModelPortaliP31064.
SMRiP31064.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0394 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41066VF. Bacteria.
COG2391. LUCA.
HOGENOMiHOG000285397.
InParanoidiP31064.
KOiK07112.
OMAiVMIIGMF.

Family and domain databases

InterProiIPR007272. Sulf_transp.
[Graphical view]
PfamiPF04143. Sulf_transp. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P31064-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSWQQFKHAW LIKFWAPIPA VIAAGILSTY YFGITGTFWA VTGEFTRWGG
60 70 80 90 100
QLLQLFGVHA EEWGYFKIIH LEGSPLTRID GMMILGMFGG CFAAALWANN
110 120 130 140 150
VKLRMPRSRI RIMQAIIGGI IAGFGARLAM GCNLAAFFTG IPQFSLHAWF
160 170 180 190 200
FAIATAIGSW FGARFTLLPI FRIPVKMQKV SAASPLTQKP DQARRRFRLG
210 220 230 240 250
MLVFFGMLGW ALLTAMNQPK LGLAMLFGVG FGLLIERAQI CFTSAFRDMW
260 270 280 290 300
ITGRTHMAKA IIIGMAVSAI GIFSYVQLGV EPKIMWAGPN AVIGGLLFGF
310 320 330 340 350
GIVLAGGCET GWMYRAVEGQ VHYWWVGLGN VIGSTILAYY WDDFAPALAT
360 370 380 390 400
DWDKINLLKT FGPMGGLLVT YLLLFAALML IIGWEKRFFR RAAPQTAKEI

A
Length:401
Mass (Da):44,429
Last modified:July 1, 1993 - v1
Checksum:iE07554C206B367E4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82577.1.
U00096 Genomic DNA. Translation: AAC74996.1.
AP009048 Genomic DNA. Translation: BAA15757.1.
PIRiF64956.
RefSeqiNP_416439.1. NC_000913.3.
WP_000118897.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74996; AAC74996; b1929.
BAA15757; BAA15757; BAA15757.
GeneIDi945192.
KEGGiecj:JW1914.
eco:b1929.
PATRICi32119193. VBIEscCol129921_2011.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82577.1.
U00096 Genomic DNA. Translation: AAC74996.1.
AP009048 Genomic DNA. Translation: BAA15757.1.
PIRiF64956.
RefSeqiNP_416439.1. NC_000913.3.
WP_000118897.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31064.
SMRiP31064.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261058. 169 interactors.
DIPiDIP-11839N.
IntActiP31064. 1 interactor.
MINTiMINT-1246874.
STRINGi511145.b1929.

Protein family/group databases

TCDBi9.B.102.1.1. the yede/yeee (yede/yeee) family.

Proteomic databases

PaxDbiP31064.
PRIDEiP31064.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74996; AAC74996; b1929.
BAA15757; BAA15757; BAA15757.
GeneIDi945192.
KEGGiecj:JW1914.
eco:b1929.
PATRICi32119193. VBIEscCol129921_2011.

Organism-specific databases

EchoBASEiEB1612.
EcoGeneiEG11660. yedE.

Phylogenomic databases

eggNOGiENOG41066VF. Bacteria.
COG2391. LUCA.
HOGENOMiHOG000285397.
InParanoidiP31064.
KOiK07112.
OMAiVMIIGMF.

Enzyme and pathway databases

BioCyciEcoCyc:EG11660-MONOMER.
ECOL316407:JW1914-MONOMER.

Miscellaneous databases

PROiP31064.

Family and domain databases

InterProiIPR007272. Sulf_transp.
[Graphical view]
PfamiPF04143. Sulf_transp. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEDE_ECOLI
AccessioniPrimary (citable) accession number: P31064
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: November 2, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.