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Protein

Uncharacterized lipoprotein YedD

Gene

yedD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11659-MONOMER.
ECOL316407:JW1913-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YedD
Gene namesi
Name:yedD
Ordered Locus Names:b1928, JW1913
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11659. yedD.

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1515PROSITE-ProRule annotationAdd
BLAST
Chaini16 – 137122Uncharacterized lipoprotein YedDPRO_0000013863Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi16 – 161N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi16 – 161S-diacylglycerol cysteinePROSITE-ProRule annotation

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP31063.
PRIDEiP31063.

Interactioni

Protein-protein interaction databases

BioGridi4260392. 7 interactions.
DIPiDIP-11838N.
IntActiP31063. 12 interactions.
MINTiMINT-1248078.
STRINGi511145.b1928.

Structurei

3D structure databases

ProteinModelPortaliP31063.
SMRiP31063. Positions 20-136.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108W9D. Bacteria.
ENOG4111MXI. LUCA.
HOGENOMiHOG000121299.
OMAiQRVDRPT.

Family and domain databases

InterProiIPR025596. YedD.
[Graphical view]
PfamiPF13987. YedD. 1 hit.
[Graphical view]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P31063-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLAIAGAL LLLAGCAEVE NYNNVVKTPA PDWLAGYWQT KGPQRALVSP
60 70 80 90 100
EAIGSLIVTK EGDTLDCRQW QRVIAVPGKL TLMSDDLTNV TVKRELYEVE
110 120 130
RDGNTIEYDG MTMERVDRPT AECAAALDKA PLPTPLP
Length:137
Mass (Da):14,983
Last modified:July 1, 1993 - v1
Checksum:i4D91CA4002BD3281
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82576.1.
U00096 Genomic DNA. Translation: AAC74995.1.
AP009048 Genomic DNA. Translation: BAA15756.1.
PIRiE64956.
RefSeqiNP_416438.1. NC_000913.3.
WP_001350519.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74995; AAC74995; b1928.
BAA15756; BAA15756; BAA15756.
GeneIDi949082.
KEGGiecj:JW1913.
eco:b1928.
PATRICi32119191. VBIEscCol129921_2010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. Translation: AAA82576.1.
U00096 Genomic DNA. Translation: AAC74995.1.
AP009048 Genomic DNA. Translation: BAA15756.1.
PIRiE64956.
RefSeqiNP_416438.1. NC_000913.3.
WP_001350519.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP31063.
SMRiP31063. Positions 20-136.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260392. 7 interactions.
DIPiDIP-11838N.
IntActiP31063. 12 interactions.
MINTiMINT-1248078.
STRINGi511145.b1928.

Proteomic databases

PaxDbiP31063.
PRIDEiP31063.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74995; AAC74995; b1928.
BAA15756; BAA15756; BAA15756.
GeneIDi949082.
KEGGiecj:JW1913.
eco:b1928.
PATRICi32119191. VBIEscCol129921_2010.

Organism-specific databases

EchoBASEiEB1611.
EcoGeneiEG11659. yedD.

Phylogenomic databases

eggNOGiENOG4108W9D. Bacteria.
ENOG4111MXI. LUCA.
HOGENOMiHOG000121299.
OMAiQRVDRPT.

Enzyme and pathway databases

BioCyciEcoCyc:EG11659-MONOMER.
ECOL316407:JW1913-MONOMER.

Miscellaneous databases

PROiP31063.

Family and domain databases

InterProiIPR025596. YedD.
[Graphical view]
PfamiPF13987. YedD. 1 hit.
[Graphical view]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEDD_ECOLI
AccessioniPrimary (citable) accession number: P31063
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: September 7, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.