P31040 (DHSA_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 154.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial EC=1.3.5.1 Alternative name(s): Flavoprotein subunit of complex II Short name=Fp | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 664 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). Can act as a tumor suppressor. Ref.12 |
| Catalytic activity | Succinate + ubiquinone = fumarate + ubiquinol. |
| Cofactor | FAD. |
| Pathway | |
| Subunit structure | Component of complex II composed of four subunits: the flavoprotein (FP) SDHA, iron-sulfur protein (IP) SDHB, and a cytochrome b560 composed of SDHC and SDHD. Interacts with SDHAF2/SDH5; interaction is required for FAD attachment. Ref.10 |
| Subcellular location | Mitochondrion inner membrane; Peripheral membrane protein; Matrix side. |
| Involvement in disease | Mitochondrial complex II deficiency (MT-C2D) [MIM:252011]: A disorder of the mitochondrial respiratory chain with heterogeneous clinical manifestations. Clinical features include psychomotor regression in infants, poor growth with lack of speech development, severe spastic quadriplegia, dystonia, progressive leukoencephalopathy, muscle weakness, exercise intolerance, cardiomyopathy. Some patients manifest Leigh syndrome or Kearns-Sayre syndrome. Leigh syndrome (LS) [MIM:256000]: An early-onset progressive neurodegenerative disorder characterized by the presence of focal, bilateral lesions in one or more areas of the central nervous system including the brainstem, thalamus, basal ganglia, cerebellum and spinal cord. Clinical features depend on which areas of the central nervous system are involved and include subacute onset of psychomotor retardation, hypotonia, ataxia, weakness, vision loss, eye movement abnormalities, seizures, and dysphagia. Cardiomyopathy, dilated 1GG (CMD1GG) [MIM:613642]: A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. Paragangliomas 5 (PGL5) [MIM:614165]: A neural crest tumor usually derived from the chromoreceptor tissue of a paraganglion. Paragangliomas can develop at various body sites, including the head, neck, thorax and abdomen. Most commonly, they are located in the head and neck region, specifically at the carotid bifurcation, the jugular foramen, the vagal nerve, and in the middle ear. |
| Miscellaneous | The complex, present in mitochondria, can be degraded to form EC 1.3.99.1, which no longer reacts with ubiquinone. |
| Sequence similarities | Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. |
| Sequence caution | The sequence CAA37886.1 differs from that shown. Reason: Differs extensively from that shown. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| SDHB | P21912 | 2 | EBI-1057265,EBI-1056481 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – 43 | 43 | Mitochondrion By similarity | ||||||
| Chain | 44 – 664 | 621 | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | PRO_0000010335 | |||||
Regions | |||||||||
| Nucleotide binding | 68 – 73 | 6 | FAD By similarity | ||||||
| Nucleotide binding | 91 – 106 | 16 | FAD By similarity | ||||||
| Nucleotide binding | 456 – 457 | 2 | FAD By similarity | ||||||
Sites | |||||||||
| Active site | 340 | 1 | Proton acceptor By similarity | ||||||
| Binding site | 275 | 1 | FAD By similarity | ||||||
| Binding site | 296 | 1 | Substrate By similarity | ||||||
| Binding site | 308 | 1 | Substrate By similarity | ||||||
| Binding site | 407 | 1 | Substrate By similarity | ||||||
| Binding site | 440 | 1 | FAD By similarity | ||||||
| Binding site | 451 | 1 | Substrate By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 99 | 1 | Tele-8alpha-FAD histidine By similarity | ||||||
| Modified residue | 179 | 1 | N6-acetyllysine Ref.11 | ||||||
| Modified residue | 252 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 335 | 1 | N6-acetyllysine Ref.11 | ||||||
| Modified residue | 485 | 1 | N6-acetyllysine By similarity | ||||||
| Modified residue | 498 | 1 | N6-acetyllysine By similarity | ||||||
| Modified residue | 538 | 1 | N6-acetyllysine By similarity | ||||||
| Modified residue | 541 | 1 | N6-acetyllysine Ref.11 | ||||||
| Modified residue | 547 | 1 | N6-acetyllysine By similarity | ||||||
| Modified residue | 608 | 1 | N6-acetyllysine Ref.11 | ||||||
Natural variations | |||||||||
| Natural variant | 33 | 1 | F → V. Corresponds to variant rs1061518 [ dbSNP | Ensembl ]. | VAR_049214 | |||||
| Natural variant | 38 | 1 | D → V. Corresponds to variant rs34635677 [ dbSNP | Ensembl ]. | VAR_049215 | |||||
| Natural variant | 240 | 1 | E → Q. Corresponds to variant rs1041946 [ dbSNP | Ensembl ]. | VAR_049216 | |||||
| Natural variant | 333 | 1 | V → I. Corresponds to variant rs1062468 [ dbSNP | Ensembl ]. | VAR_059307 | |||||
| Natural variant | 524 | 1 | A → V in LS. Ref.3 | VAR_016878 | |||||
| Natural variant | 554 | 1 | R → W in LS. Ref.8 | VAR_002449 | |||||
| Natural variant | 555 | 1 | G → E in MT-C2D and CMD1GG. Ref.14 Ref.15 | VAR_016879 | |||||
| Natural variant | 589 | 1 | R → W in PGL5; loss of activity. Ref.12 | VAR_065975 | |||||
| Natural variant | 657 | 1 | V → I. Ref.2 Corresponds to variant rs6962 [ dbSNP | Ensembl ]. | VAR_049217 | |||||
Experimental info | |||||||||
| Sequence conflict | 356 | 1 | G → D in AAD51006. Ref.3 | ||||||
| Sequence conflict | 398 | 1 | E → D in AAD51006. Ref.3 | ||||||
| Sequence conflict | 591 | 1 | A → T in AAD51006. Ref.3 | ||||||
| Sequence conflict | 596 | 1 | D → G in AAD51006. Ref.3 | ||||||
| Sequence conflict | 600 | 1 | R → Q in AAD51006. Ref.3 | ||||||
| Sequence conflict | 629 | 1 | Y → F in AAA20683. Ref.2 | ||||||
| Sequence conflict | 640 | 1 | E → G in AAD51006. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Human complex II (succinate-ubiquinone oxidoreductase): cDNA cloning of the flavoprotein (Fp) subunit of liver mitochondria." Hirawake H., Wang H., Kuramochi T., Kojima S., Kita K. J. Biochem. 116:221-227(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Liver. |
| [2] | "The cDNA sequence of the flavoprotein subunit of human heart succinate dehydrogenase." Morris A.A.M., Farnsworth L., Ackrell B.A.C., Turnbull D.M., Birch-MacHin M.A. Biochim. Biophys. Acta 1185:125-128(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT ILE-657. Tissue: Heart. |
| [3] | "Compound heterozygous mutations in the flavoprotein gene of the respiratory chain complex II in a patient with Leigh syndrome." Parfait B., Chretien D., Roetig A., Marsac C., Munnich A., Rustin P. Hum. Genet. 106:236-243(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANT LS VAL-524. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Tongue. |
| [5] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Colon. |
| [7] | "Cloning of the flavoprotein subunit of human succinate dehydrogenase." Malcovati M., Marchetti L., Zanelli E., Tenchini M.L. (In) Curti B., Ronchi S., Zanetti G. (eds.); Flavins and flavoproteins 1990, pp.727-730, Walter de Gruyter, Berlin (1991) Cited for: PRELIMINARY PARTIAL NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Placenta. |
| [8] | "Mutation of a nuclear succinate dehydrogenase gene results in mitochondrial respiratory chain deficiency." Bourgeron T., Rustin P., Chretien D., Birch-MacHin M.A., Bourgeois M., Viegas-Pequignot E., Munnich A., Roetig A. Nat. Genet. 11:144-149(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 546-562, VARIANT LS TRP-554. |
| [9] | "Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes." Aboulaich N., Vainonen J.P., Stralfors P., Vener A.V. Biochem. J. 383:237-248(2004) [PubMed] [Europe PMC] [Abstract] Cited for: PROTEIN SEQUENCE OF 76-92 AND 398-418. Tissue: Adipocyte. |
| [10] | "SDH5, a gene required for flavination of succinate dehydrogenase, is mutated in paraganglioma." Hao H.-X., Khalimonchuk O., Schraders M., Dephoure N., Bayley J.-P., Kunst H., Devilee P., Cremers C.W.R.J., Schiffman J.D., Bentz B.G., Gygi S.P., Winge D.R., Kremer H., Rutter J. Science 325:1139-1142(2009) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH SDHAF2. |
| [11] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T.C., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-179; LYS-335; LYS-541 AND LYS-608, MASS SPECTROMETRY. |
| [12] | "SDHA is a tumor suppressor gene causing paraganglioma." Burnichon N., Briere J.J., Libe R., Vescovo L., Riviere J., Tissier F., Jouanno E., Jeunemaitre X., Benit P., Tzagoloff A., Rustin P., Bertherat J., Favier J., Gimenez-Roqueplo A.P. Hum. Mol. Genet. 19:3011-3020(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, VARIANT PGL5 TRP-589, CHARACTERIZATION OF VARIANT PGL5 TRP-589. |
| [13] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [14] | "Homozygous Gly555Glu mutation in the nuclear-encoded 70 kDa flavoprotein gene causes instability of the respiratory chain complex II." Van Coster R., Seneca S., Smet J., Van Hecke R., Gerlo E., Devreese B., Van Beeumen J., Leroy J.G., De Meirleir L., Lissens W. Am. J. Med. Genet. A 120:13-18(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT MT-C2D GLU-555. |
| [15] | "Familial neonatal isolated cardiomyopathy caused by a mutation in the flavoprotein subunit of succinate dehydrogenase." Levitas A., Muhammad E., Harel G., Saada A., Caspi V.C., Manor E., Beck J.C., Sheffield V., Parvari R. Eur. J. Hum. Genet. 18:1160-1165(2010) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT CMD1GG GLU-555. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | D30648 mRNA. Translation: BAA06332.1. L21936 mRNA. Translation: AAA20683.1. AF171030 AF171029 Genomic DNA. Translation: AAD51006.1.AK291311 mRNA. Translation: BAF84000.1. CH471235 Genomic DNA. Translation: EAW50983.1. BC001380 mRNA. Translation: AAH01380.1. X53943 mRNA. Translation: CAA37886.1. Sequence problems. S79641 Genomic DNA. Translation: AAB35332.1. |
| IPI | IPI00305166. |
| PIR | JX0336. S21302. |
| RefSeq | NP_004159.2. NM_004168.2. |
| UniGene | Hs.440475. |
3D structure databases | |
| ProteinModelPortal | P31040. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P31040. 14 interactions. |
| STRING | 9606.ENSP00000264932. |
PTM databases | |
| PhosphoSite | P31040. |
Polymorphism databases | |
| DMDM | 1169337. |
2D gel databases | |
| REPRODUCTION-2DPAGE | IPI00305166. |
Proteomic databases | |
| PaxDb | P31040. |
| PeptideAtlas | P31040. |
| PRIDE | P31040. |
Protocols and materials databases | |
| DNASU | 6389. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000264932; ENSP00000264932; ENSG00000073578. |
| GeneID | 6389. |
| KEGG | hsa:6389. |
| UCSC | uc003jao.4. human. |
Organism-specific databases | |
| CTD | 6389. |
| GeneCards | GC05P000208. |
| H-InvDB | HIX0120996. |
| HGNC | HGNC:10680. SDHA. |
| HPA | CAB034929. |
| MIM | 252011. phenotype. 256000. phenotype. 600857. gene. 613642. phenotype. 614165. phenotype. |
| neXtProt | NX_P31040. |
| Orphanet | 154. Familial isolated dilated cardiomyopathy. 29072. Hereditary pheochromocytoma-paraganglioma. 3208. Isolated succinate-CoQ reductase deficiency. 255241. Leigh syndrome with leukodystrophy. |
| PharmGKB | PA35605. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1053. |
| HOVERGEN | HBG001461. |
| InParanoid | P31040. |
| KO | K00234. |
| OMA | CFTADAT. |
| OrthoDB | EOG47H5PJ. |
| PhylomeDB | P31040. |
Enzyme and pathway databases | |
| BioCyc | MetaCyc:ENSG00000073578-MONOMER. |
| Reactome | REACT_111217. Metabolism. |
| UniPathway | UPA00223; UER01006. |
Gene expression databases | |
| ArrayExpress | P31040. |
| Bgee | P31040. |
| CleanEx | HS_SDHA. |
| Genevestigator | P31040. |
| GermOnline | ENSG00000073578. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.20.58.100. 1 hit. |
| InterPro | IPR003953. FAD_bind_dom. IPR003952. FRD_SDH_FAD_BS. IPR015939. Fum_Rdtase/Succ_DH_flav-like_C. IPR011281. Succ_DH_flav_su_fwd. IPR014006. Succ_Dhase_FrdA_Gneg. [Graphical view] |
| PANTHER | PTHR11632:SF5. PTHR11632:SF5. 1 hit. |
| Pfam | PF00890. FAD_binding_2. 1 hit. PF02910. Succ_DH_flav_C. 1 hit. [Graphical view] |
| SUPFAM | SSF46977. Succ_DH_flav_C. 1 hit. |
| TIGRFAMs | TIGR01816. sdhA_forward. 1 hit. TIGR01812. sdhA_frdA_Gneg. 1 hit. |
| PROSITE | PS00504. FRD_SDH_FAD_BINDING. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL5758. |
| DrugBank | DB00139. Succinic acid. |
| GenomeRNAi | 6389. |
| NextBio | 24820. |
| SOURCE | Search... |
Entry information
| Entry name | DHSA_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P31040 Secondary accession number(s): A8K5J6, Q16395, Q9UMY5 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 5 Human chromosome 5: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with
