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Reviewed, UniProtKB/Swiss-Prot P31016 (DLG4_RAT)

Last modified June 16, 2009. Version 112. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Disks large homolog 4
Alternative name(s):
    Postsynaptic density protein 95
      Short name=PSD-95
    Synapse-associated protein 90
      Short name=SAP90
Gene names
Name: Dlg4
Synonyms: Dlgh4, Psd95
OrganismRattus norvegicus (Rat)
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length724 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Interacts with the cytoplasmic tail of NMDA receptor subunits and shaker-type potassium channels. Required for synaptic plasticity associated with NMDA receptor signaling. Overexpression or depletion of DLG4 changes the ratio of excitatory to inhibitory synapses in hippocampal neurons. May reduce the amplitude of ACCN3 acid-evoked currents by retaining the channel intracellularly. May regulate the intracellular trafficking of ADR1B. Ref.15 Ref.17

Subunit structure

Interacts through its first two PDZ domains with KCNA1, KCNA2, KCNA3, KCNA4 and ERBB4. Interacts through its first PDZ domain with GRIK2, KCNA4 and CRIPT. Interacts through its third PDZ domain with NLGN1, and probably with NLGN2 and NLGN3. May interact with HTR2A. Interacts through its guanylate kinase-like domain with KIF13B. Isoform 2 interacts through an L27 domain with HGS/HRS and the first L27 domain of CASK By similarity. Interacts through its first two PDZ domains with GRIN2A, GRIN2B, GRIN2C, GRIN2D, ACCN3, certain splice forms of GRIN1, KCND2, CXADR and SYNGAP1. Interacts through its second PDZ domain with the PDZ domain of NOS1 or the C-terminus of CAPON. Interacts through its guanylate kinase-like domain with DLGAP1/GKAP, DLGAP2, DLGAP3, DLGAP4, MAP1A and BEGAIN. Interacts through its third PDZ domain with CRIPT. Interacts with ANKS1B, LRFN1 and PRR7.

Subcellular location

Cell membrane; Peripheral membrane protein. Cell junctionsynapsepostsynaptic cell membranepostsynaptic density. Cell junctionsynapse. Note: High levels in postsynaptic density of neurons in the forebrain. Also in presynaptic region of inhibitory synapses formed by cerebellar basket cells on axon hillocks of Purkinje cells. Ref.6 Ref.7

Tissue specificity

Brain. Highest levels of isoform 2 in cerebellum, cortex, hippocampus, and corpus striatum. Ref.14

Domain

The PDZ domain 3 mediates interaction with ADR1B By similarity.

The L27 domain near the N-terminus of isoform 2 is required for HGS/HRS-dependent targeting to post-synaptic density By similarity.

Post-translational modification

Palmitoylation of isoform 1 is required for targeting to postsynaptic density.

Sequence similarities

Belongs to the MAGUK family.

Contains 1 guanylate kinase-like domain.

Contains 3 PDZ (DHR) domains.

Contains 1 SH3 domain.

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Select]
Isoform 1 (identifier: P31016-1)

Also known as: PSD95-alpha;

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: P31016-2)

Also known as: PSD95-beta;

The sequence of this isoform is not available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 724724Disks large homolog 4
PRO_0000094562

Regions

Domain65 – 15187PDZ 1
Domain160 – 24687PDZ 2
Domain313 – 39381PDZ 3
Domain428 – 49871SH3
Domain534 – 709176Guanylate kinase-like

Amino acid modifications

Modified residue1421Phosphoserine By similarity
Modified residue2401Phosphotyrosine By similarity
Modified residue2951Phosphoserine By similarity
Modified residue3971Phosphotyrosine By similarity
Modified residue4151Phosphoserine By similarity
Modified residue4181Phosphoserine By similarity
Modified residue4321Phosphotyrosine By similarity
Modified residue5801Phosphotyrosine By similarity
Modified residue6041Phosphotyrosine By similarity
Modified residue7011Phosphotyrosine By similarity
Modified residue7151Phosphotyrosine By similarity
Lipidation31S-palmitoyl cysteine Ref.12
Lipidation51S-palmitoyl cysteine Ref.12

Experimental info

Mutagenesis31C → S: Loss of palmitoylation and targeting to postsynaptic density. Ref.12
Mutagenesis51C → S: Loss of palmitoylation and targeting to postsynaptic density. Ref.12
Sequence conflict611M → L in CAA47103. Ref.2
Sequence conflict781S → T in CAA47103. Ref.2
Sequence conflict177 – 1826GVGNQH → ALGTSI in CAA47103. Ref.2
Sequence conflict2001A → G in CAA47103. Ref.2
Sequence conflict2541S → T in CAA47103. Ref.2
Sequence conflict540 – 55516LGPTK…LLSEF → SLDPPKTVPTMIFSPSS in CAA47103. Ref.2
Sequence conflict623 – 6253GKH → RDQ Ref.4

Secondary structure

...................................................................................................... 724
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 (PSD95-alpha) [UniParc].

Last modified July 1, 1993. Version 1.
Checksum: 7922D4E8E0F9AD85

FASTA72480,465
        10         20         30         40         50         60 
MDCLCIVTTK KYRYQDEDTP PLEHSPAHLP NQANSPPVIV NTDTLEAPGY ELQVNGTEGE 

        70         80         90        100        110        120 
MEYEEITLER GNSGLGFSIA GGTDNPHIGD DPSIFITKII PGGAAAQDGR LRVNDSILFV 

       130        140        150        160        170        180 
NEVDVREVTH SAAVEALKEA GSIVRLYVMR RKPPAEKVME IKLIKGPKGL GFSIAGGVGN 

       190        200        210        220        230        240 
QHIPGDNSIY VTKIIEGGAA HKDGRLQIGD KILAVNSVGL EDVMHEDAVA ALKNTYDVVY 

       250        260        270        280        290        300 
LKVAKPSNAY LSDSYAPPDI TTSYSQHLDN EISHSSYLGT DYPTAMTPTS PRRYSPVAKD 

       310        320        330        340        350        360 
LLGEEDIPRE PRRIVIHRGS TGLGFNIVGG EDGEGIFISF ILAGGPADLS GELRKGDQIL 

       370        380        390        400        410        420 
SVNGVDLRNA SHEQAAIALK NAGQTVTIIA QYKPEEYSRF EAKIHDLREQ LMNSSLGSGT 

       430        440        450        460        470        480 
ASLRSNPKRG FYIRALFDYD KTKDCGFLSQ ALSFRFGDVL HVIDAGDEEW WQARRVHSDS 

       490        500        510        520        530        540 
ETDDIGFIPS KRRVERREWS RLKAKDWGSS SGSQGREDSV LSYETVTQME VHYARPIIIL 

       550        560        570        580        590        600 
GPTKDRANDD LLSEFPDKFG SCVPHTTRPK REYEIDGRDY HFVSSREKME KDIQAHKFIE 

       610        620        630        640        650        660 
AGQYNSHLYG TSVQSVREVA EQGKHCILDV SANAVRRLQA AHLHPIAIFI RPRSLENVLE 

       670        680        690        700        710        720 
INKRITEEQA RKAFDRATKL EQEFTECFSA IVEGDSFEEI YHKVKRVIED LSGPYIWVPA 


RERL 

« Hide

Isoform 2 (PSD95-beta) (Sequence not available). FASTA

References

[1]"The rat brain postsynaptic density fraction contains a homolog of the Drosophila discs-large tumor suppressor protein."
Cho K.-O., Hunt C.A., Kennedy M.B.
Neuron 9:929-942(1992) [PubMed: 1419001] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: Sprague-Dawley.
Tissue: Brain.
[2]"SAP90, a rat presynaptic protein related to the product of the Drosophila tumor suppressor gene dlg-A."
Kistner U., Wenzel B.M., Veh R.W., Cases-Langhoff C., Garner A.M., Appeltauer U., Voss B., Gundelfinger E.D., Garner C.C.
J. Biol. Chem. 268:4580-4583(1993) [PubMed: 7680343] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: Sprague-Dawley.
Tissue: Brain.
[3]Lubec G., Diao W.
Submitted (APR-2007) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 113-126; 212-233; 300-312; 381-399 AND 598-617, MASS SPECTROMETRY.
Strain: Sprague-Dawley.
Tissue: Hippocampus.
[4]Adams L.D., Werny I., Schwartz S.M.
Submitted (NOV-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 566-625.
Strain: Wistar Kyoto.
Tissue: Vascular smooth muscle.
[5]"Domain interaction between NMDA receptor subunits and the postsynaptic density protein PSD-95."
Kornau H.C., Schenker L.T., Kennedy M.B., Seeburg P.H.
Science 269:1737-1740(1995) [PubMed: 7569905] [Abstract]
Cited for: INTERACTION WITH GRIN2A; GRIN2B; GRIN2C AND GRIN2D.
[6]"Cloning and characterization of postsynaptic density 93, a nitric oxide synthase interacting protein."
Brenman J.E., Christopherson K.S., Craven S.E., McGee A.W., Bredt D.S.
J. Neurosci. 16:7407-7415(1996) [PubMed: 8922396] [Abstract]
Cited for: SUBCELLULAR LOCATION.
[7]"SAPAPs. A family of PSD-95/SAP90-associated proteins localized at postsynaptic density."
Takeuchi M., Hata Y., Hirao K., Toyoda A., Irie M., Takai Y.
J. Biol. Chem. 272:11943-11951(1997) [PubMed: 9115257] [Abstract]
Cited for: INTERACTION WITH DLGAP1; DLGAP2; DLGAP3 AND DLGAP4, SUBCELLULAR LOCATION.
Tissue: Brain.
[8]"BEGAIN (brain-enriched guanylate kinase-associated protein), a novel neuronal PSD-95/SAP90-binding protein."
Deguchi M., Hata Y., Takeuchi M., Ide N., Hirao K., Yao I., Irie M., Toyoda A., Takai Y.
J. Biol. Chem. 273:26269-26272(1998) [PubMed: 9756850] [Abstract]
Cited for: INTERACTION WITH BEGAIN AND DLGAP1.
[9]"Localization of postsynaptic density-93 to dendritic microtubules and interaction with microtubule-associated protein 1A."
Brenman J.E., Topinka J.R., Cooper E.C., McGee A.W., Rosen J., Milroy T., Ralston H.J., Bredt D.S.
J. Neurosci. 18:8805-8813(1998) [PubMed: 9786987] [Abstract]
Cited for: INTERACTION WITH MAP1A.
[10]"SynGAP: a synaptic RasGAP that associates with the PSD-95/SAP90 protein family."
Kim J.H., Liao D., Lau L.-F., Huganir R.L.
Neuron 20:683-691(1998) [PubMed: 9581761] [Abstract]
Cited for: INTERACTION WITH SYNGAP1.
[11]"CRIPT, a novel postsynaptic protein that binds to the third PDZ domain of PSD-95/SAP90."
Niethammer M., Valtschanoff J.G., Kapoor T.M., Allison D.W., Weinberg R.J., Craig A.M., Sheng M.
Neuron 20:693-707(1998) [PubMed: 9581762] [Abstract]
Cited for: INTERACTION WITH CRIPT.
[12]"Dual palmitoylation of PSD-95 mediates its vesiculotubular sorting, postsynaptic targeting, and ion channel clustering."
El-Husseini A.E., Craven S.E., Chetkovich D.M., Firestein B.L., Schnell E., Aoki C., Bredt D.S.
J. Cell Biol. 148:159-172(2000) [PubMed: 10629226] [Abstract]
Cited for: MUTAGENESIS OF CYS-3 AND CYS-5, PALMITOYLATION AT CYS-3 AND CYS-5.
[13]"Cell surface targeting and clustering interactions between heterologously expressed PSD-95 and the Shal voltage-gated potassium channel, Kv4.2."
Wong W., Newell E.W., Jugloff D.G.M., Jones O.T., Schlichter L.C.
J. Biol. Chem. 277:20423-20430(2002) [PubMed: 11923279] [Abstract]
Cited for: INTERACTION WITH KCND2.
[14]"Postsynaptic targeting of alternative postsynaptic density-95 isoforms by distinct mechanisms."
Chetkovich D.M., Bunn R.C., Kuo S.-H., Kawasaki Y., Kohwi M., Bredt D.S.
J. Neurosci. 22:6415-6425(2002) [PubMed: 12151521] [Abstract]
Cited for: ALTERNATIVE SPLICING, TISSUE SPECIFICITY.
[15]"PSD-95 and Lin-7b interact with acid-sensing ion channel-3 and have opposite effects on H+- gated current."
Hruska-Hageman A.M., Benson C.J., Leonard A.S., Price M.P., Welsh M.J.
J. Biol. Chem. 279:46962-46968(2004) [PubMed: 15317815] [Abstract]
Cited for: INTERACTION WITH ACCN3, FUNCTION.
[16]"A role for the PDZ-binding domain of the coxsackie B virus and adenovirus receptor (CAR) in cell adhesion and growth."
Ashbourne-Excoffon K.J.D., Hruska-Hageman A.M., Klotz M., Traver G.L., Zabner J.
J. Cell Sci. 117:4401-4409(2004) [PubMed: 15304526] [Abstract]
Cited for: INTERACTION WITH CXADR.
[17]"A balance between excitatory and inhibitory synapses is controlled by PSD-95 and neuroligin."
Prange O., Wong T.P., Gerrow K., Wang Y.T., El-Husseini A.
Proc. Natl. Acad. Sci. U.S.A. 101:13915-13920(2004) [PubMed: 15358863] [Abstract]
Cited for: FUNCTION.
[18]"Proteomic analysis revealed a novel synaptic proline-rich membrane protein (PRR7) associated with PSD-95 and NMDA receptor."
Murata Y., Doi T., Taniguchi H., Fujiyoshi Y.
Biochem. Biophys. Res. Commun. 327:183-191(2005) [PubMed: 15629447] [Abstract]
Cited for: INTERACTION WITH PRR7.
[19]"SALM synaptic cell adhesion-like molecules regulate the differentiation of excitatory synapses."
Ko J., Kim S., Chung H.S., Kim K., Han K., Kim H., Jun H., Kaang B.-K., Kim E.
Neuron 50:233-245(2006) [PubMed: 16630835] [Abstract]
Cited for: INTERACTION WITH LRFN1.
[20]"Activity-dependent AIDA-1 nuclear signaling regulates nucleolar numbers and protein synthesis in neurons."
Jordan B.A., Fernholz B.D., Khatri L., Ziff E.B.
Nat. Neurosci. 10:427-435(2007) [PubMed: 17334360] [Abstract]
Cited for: INTERACTION WITH ANKS1B.
[21]"Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ."
Doyle D.A., Lee A., Lewis J., Kim E., Sheng M., Mackinnon R.
Cell 85:1067-1076(1996) [PubMed: 8674113] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.82 ANGSTROMS) OF 302-402.
[22]"Solution structure and backbone dynamics of the second PDZ domain of postsynaptic density-95."
Tochio H., Hung F., Li M., Bredt D.S., Zhang M.
J. Mol. Biol. 295:225-237(2000) [PubMed: 10623522] [Abstract]
Cited for: STRUCTURE BY NMR OF 155-246, INTERACTION WITH NOS1 AND CAPON.
[23]"Structure of the SH3-guanylate kinase module from PSD-95 suggests a mechanism for regulated assembly of MAGUK scaffolding proteins."
McGee A.W., Dakoji S.R., Olsen O., Bredt D.S., Lim W.A., Prehoda K.E.
Mol. Cell 8:1291-1301(2001) [PubMed: 11779504] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) OF 430-724.
[24]"Structural characterization of the intramolecular interaction between the SH3 and guanylate kinase domains of PSD-95."
Tavares G.A., Panepucci E.H., Brunger A.T.
Mol. Cell 8:1313-1325(2001) [PubMed: 11779506] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 430-724.
+Additional computationally mapped references.

Cross-references

Sequence databases

M96853 mRNA. Translation: AAA41971.1.
X66474 mRNA. Translation: CAA47103.1.
U77090 mRNA. Translation: AAB38270.1.
IPIIPI00566635.
PIRA45436.
JH0800.
RefSeqNP_062567.1.
UniGeneRn.9765

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1BE9X-ray1.82A302-402[»]
1BFEX-ray2.30A302-402[»]
1IU0NMR-A61-151[»]
1IU2NMR-A61-151[»]
1JXMX-ray2.00A430-724[»]
1JXOX-ray2.30A/B430-724[»]
1KJWX-ray1.80A430-724[»]
1QLCNMR-A155-249[»]
1RGRNMR-A62-154[»]
1TP3X-ray1.99A302-402[»]
1TP5X-ray1.54A302-402[»]
1TQ3X-ray1.89A302-402[»]
ModBaseSearch...

Protein-protein interaction databases

IntActP31016. 30 interactions.

PTM databases

PhosphoSiteP31016.

Genome annotation databases

EnsemblENSRNOG00000018526. Rattus norvegicus. [Contig view]
GeneID29495.
KEGGrno:29495.

Organism-specific databases

RGD68424. Dlgh4.

Phylogenomic databases

HOVERGENP31016.

Gene expression databases

ArrayExpressP31016.
GermOnlineENSRNOG00000018526. Rattus norvegicus.

Family and domain databases

InterProIPR019586. Gua_kin_assoc_C.
IPR008144. Guanylate_kin.
IPR008145. Guanylt/Ca.
IPR016313. M-assoc_guanylate_kinase.
IPR019590. MAGUK_PEST_N.
IPR001478. PDZ/DHR/GLGF.
IPR019583. PDZ_assoc.
IPR011511. SH3_2.
IPR001452. SH3_domain.
[Graphical view]
PfamPF10603. Gua_kin_assoc_C. 1 hit.
PF00625. Guanylate_kin. 1 hit.
PF10608. MAGUK_N_PEST. 1 hit.
PF00595. PDZ. 3 hits.
PF10600. PDZ_assoc. 1 hit.
PF07653. SH3_2. 1 hit.
[Graphical view]
PIRSFPIRSF001741. MAGUK_DLGH. 1 hit.
ProDomPD000066. SH3. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00072. GuKc. 1 hit.
SM00228. PDZ. 3 hits.
SM00326. SH3. 1 hit.
[Graphical view]
PROSITEPS00856. GUANYLATE_KINASE_1. 1 hit.
PS50052. GUANYLATE_KINASE_2. 1 hit.
PS50106. PDZ. 3 hits.
PS50002. SH3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

DrugBankDB00536. Guanidine.
NextBio609380.

Entry information

Entry nameDLG4_RAT
AccessionPrimary (citable) accession number: P31016
Secondary accession number(s): P97631
Entry history
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: June 16, 2009
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents