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Protein

Uncharacterized HTH-type transcriptional regulator YbeF

Gene

ybeF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi46 – 65H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:EG11594-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbeF
Gene namesi
Name:ybeF
Ordered Locus Names:b0629, JW0624
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11594 ybeF

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057791 – 317Uncharacterized HTH-type transcriptional regulator YbeFAdd BLAST317

Proteomic databases

PaxDbiP30979
PRIDEiP30979

Interactioni

Protein-protein interaction databases

BioGridi4260778, 8 interactors
IntActiP30979, 2 interactors
STRINGi316385.ECDH10B_0698

Structurei

3D structure databases

ProteinModelPortaliP30979
SMRiP30979
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 86HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG41064T2 Bacteria
ENOG4110BBF LUCA
HOGENOMiHOG000267879
OMAiRMTWNES
PhylomeDBiP30979

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P30979-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDSNNQIEPC LSRKSSEGKP QIFTTLRNID LNLLTIFEAV YVHKGIVNAA
60 70 80 90 100
KVLNLTPSAI SQSIQKLRVI FPDPLFIRKG QGVTPTAFAM HLHEYISQGL
110 120 130 140 150
ESILGALDIE GSYDKQRTIT IATTPSVGAL VLPVIYRAIK THYPQLLLRN
160 170 180 190 200
PPISDAENQL SQFQTDLIID NMFCTNRTVQ HHVLFTDNMV LICREGNPLL
210 220 230 240 250
SLEDDRETID NAAHVLLLPE EQNFSGLRQR VQEMFPDRQI NFTSYNILTI
260 270 280 290 300
AALVANSDML AIIPSRFYNL FSRCWPLEKL PFPSLNEEQI DFSIHYNKFS
310
LRDPILHGVI DVIRNAF
Length:317
Mass (Da):35,960
Last modified:November 1, 1997 - v3
Checksum:i27DAC6963541736F
GO

Sequence cautioni

The sequence AAA66344 differs from that shown. Reason: Frameshift at positions 53 and 99.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti297Missing in AAA66344 (PubMed:8444795).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L07636 Genomic DNA Translation: AAA66344.1 Frameshift.
U82598 Genomic DNA Translation: AAB40829.1
U00096 Genomic DNA Translation: AAC73730.2
AP009048 Genomic DNA Translation: BAA35272.1
PIRiC64797
RefSeqiNP_415162.4, NC_000913.3
WP_000378026.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73730; AAC73730; b0629
BAA35272; BAA35272; BAA35272
GeneIDi945219
KEGGiecj:JW0624
eco:b0629
PATRICifig|1411691.4.peg.1639

Similar proteinsi

Entry informationi

Entry nameiYBEF_ECOLI
AccessioniPrimary (citable) accession number: P30979
Secondary accession number(s): P75727, P77105
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 134 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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