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Protein

Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2

Gene

rpap-2

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Putative RNA polymerase II subunit B1 C-terminal domain (CTD) phosphatase involved in RNA polymerase II transcription regulation.By similarity

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi59ZincPROSITE-ProRule annotation1
Metal bindingi64ZincPROSITE-ProRule annotation1
Metal bindingi97ZincPROSITE-ProRule annotation1
Metal bindingi101ZincPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri36 – 121RTR1-typePROSITE-ProRule annotationAdd BLAST86

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolase, Protein phosphatase
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2 (EC:3.1.3.16)
Alternative name(s):
RNA polymerase II-associated protein 2
Gene namesi
Name:rpap-2Imported
ORF Names:R08D7.2Imported
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiR08D7.2 ; CE00290 ; WBGene00011143 ; rpap-2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000654301 – 455Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2Add BLAST455

Proteomic databases

EPDiP30641
PaxDbiP30641
PeptideAtlasiP30641
PRIDEiP30641

Expressioni

Gene expression databases

BgeeiWBGene00011143

Interactioni

Protein-protein interaction databases

STRINGi6239.R08D7.2.1

Structurei

3D structure databases

ProteinModelPortaliP30641
SMRiP30641
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RPAP2 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri36 – 121RTR1-typePROSITE-ProRule annotationAdd BLAST86

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG4780 Eukaryota
ENOG410ZZZC LUCA
HOGENOMiHOG000018107
InParanoidiP30641
KOiK20827
OMAiPNLDKYN
OrthoDBiEOG091G0TLM

Family and domain databases

Gene3Di1.25.40.820, 1 hit
InterProiView protein in InterPro
IPR007308 Rtr1/RPAP2
IPR038534 Rtr1/RPAP2_sf
PfamiView protein in Pfam
PF04181 RPAP2_Rtr1, 1 hit
PROSITEiView protein in PROSITE
PS51479 ZF_RTR1, 1 hit

Sequencei

Sequence statusi: Complete.

P30641-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METEIPVNEK ETSFRRRVYT TIETLIDIEN TDQLQEHLPH LHCLGWDEVV
60 70 80 90 100
EERYVNKQCG FPSCQKAPPK ITRNQMFEID RKEGKIFEFR KQRAKFCSEM
110 120 130 140 150
CYQKSSFVRK QLDEHPLWIT GLTEARTQKV YEVPDESFVS PIAEKSEPVD
160 170 180 190 200
SQFKKEPSIW LVTDSIIAKV QDMKLSEEAE EPKSLDPEDQ DIEPFKLTDD
210 220 230 240 250
DKDFIKSIKE FRNSNFGPPS TSKLLKTAPK PVLSAKDRKK EDEVLAKLRA
260 270 280 290 300
KYGNKNALQK KPPILIEAQE IHSKLKTMEK AKEAWLVDLI KSWFTPETRK
310 320 330 340 350
LVREGARPTG GAAEQILMDF LSGKKVDAEK LVNLPNLDKY NVKEKRLNIF
360 370 380 390 400
LHSIRNHWMD LEARLHLTPT RRDILSRVAS TFQLDSENIT GWTKREINSI
410 420 430 440 450
VIALFIVICL VDVELGDDYF KKDNASPELT AISNELCGLD SFQITGLHAA

IKSQC
Length:455
Mass (Da):52,438
Last modified:April 1, 1993 - v1
Checksum:i1FDFADAA58980F3E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z12017 Genomic DNA Translation: CAA78048.1
PIRiS41037 S24458
RefSeqiNP_498983.1, NM_066582.4
UniGeneiCel.10207

Genome annotation databases

EnsemblMetazoaiR08D7.2.1; R08D7.2.1; WBGene00011143
R08D7.2.2; R08D7.2.2; WBGene00011143
GeneIDi176267
KEGGicel:CELE_R08D7.2
UCSCiR08D7.2.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRPAP2_CAEEL
AccessioniPrimary (citable) accession number: P30641
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: May 23, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

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