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P30328

- MCP_PBCV1

UniProt

P30328 - MCP_PBCV1

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Protein

Major capsid protein

Gene

A430L

Organism
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. structural molecule activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Major capsid protein
Short name:
MCP
Alternative name(s):
VP54
Gene namesi
Ordered Locus Names:A430L
OrganismiParamecium bursaria Chlorella virus 1 (PBCV-1)
Taxonomic identifieri10506 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePhycodnaviridaeChlorovirus
Virus hostiChlorella [TaxID: 114049]
ProteomesiUP000000862: Genome

Subcellular locationi

Virion Curated

GO - Cellular componenti

  1. viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed; by host
Chaini2 – 437436Major capsid proteinPRO_0000222990Add
BLAST

Expressioni

Keywords - Developmental stagei

Late protein

Interactioni

Subunit structurei

Homodimer.

Structurei

Secondary structure

1
437
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi37 – 448
Beta strandi55 – 595
Beta strandi64 – 7714
Helixi88 – 925
Beta strandi93 – 1008
Beta strandi103 – 1097
Helixi110 – 12011
Helixi123 – 13311
Beta strandi144 – 1507
Turni154 – 1563
Helixi159 – 1613
Helixi165 – 1673
Beta strandi173 – 1797
Turni184 – 1863
Beta strandi187 – 1893
Beta strandi201 – 21111
Helixi213 – 2219
Beta strandi224 – 2329
Beta strandi235 – 2373
Beta strandi243 – 2453
Beta strandi248 – 2536
Beta strandi257 – 26711
Beta strandi284 – 2863
Turni287 – 2893
Beta strandi295 – 2973
Helixi300 – 3023
Helixi308 – 3103
Beta strandi313 – 3208
Beta strandi323 – 3264
Helixi331 – 3355
Helixi337 – 3426
Beta strandi351 – 3588
Beta strandi362 – 3643
Helixi371 – 3733
Beta strandi377 – 3837
Beta strandi385 – 3884
Helixi393 – 3964
Beta strandi403 – 4053
Helixi406 – 4105
Beta strandi413 – 42715
Beta strandi430 – 4345

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1J5QX-ray2.55A/B1-437[»]
1M3YX-ray2.00A/B/C/D25-437[»]
1M4Xelectron microscopy28.00A/B/C25-437[»]
3KK5electron microscopy-A/B/C/D/E/F/G/H/I/J/K/L/M1-437[»]
ProteinModelPortaliP30328.
SMRiP30328. Positions 25-437.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP30328.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni2 – 3130HydrophobicAdd
BLAST

Sequence similaritiesi

Belongs to the NCLDV major capsid protein family.Curated

Family and domain databases

Gene3Di2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProiIPR016114. ASFV_p72.
IPR016111. Hexon_subdom4.
IPR007542. Virus_major_coat_C.
IPR016112. VP_dsDNA_II.
[Graphical view]
PfamiPF04451. Capsid_NCLDV. 1 hit.
[Graphical view]
SUPFAMiSSF49749. SSF49749. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P30328-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGGLSQLVA YGAQDVYLTG NPQITFFKTV YRRYTNFAIE SIQQTINGSV
60 70 80 90 100
GFGNKVSTQI SRNGDLITDI VVEFVLTKGG NGGTTYYPAE ELLQDVELEI
110 120 130 140 150
GGQRIDKHYN DWFRTYDALF RMNDDRYNYR RMTDWVNNEL VGAQKRFYVP
160 170 180 190 200
LIFFFNQTPG LALPLIALQY HEVKLYFTLA SQVQGVNYNG SSAIAGAAQP
210 220 230 240 250
TMSVWVDYIF LDTQERTRFA QLPHEYLIEQ LQFTGSETAT PSATTQASQN
260 270 280 290 300
IRLNFNHPTK YLAWNFNNPT NYGQYTALAN IPGACSGAGT AAATVTTPDY
310 320 330 340 350
GNTGTYNEQL AVLDSAKIQL NGQDRFATRK GSYFNKVQPY QSIGGVTPAG
360 370 380 390 400
VYLYSFALKP AGRQPSGTCN FSRIDNATLS LTYKTCSIDA TSPAAVLGNT
410 420 430
ETVTANTATL LTALNIYAKN YNVLRIMSGM GGLAYAN
Length:437
Mass (Da):48,165
Last modified:January 23, 2007 - v3
Checksum:i97508AB2500F3A34
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M85052 Genomic DNA. Translation: AAA88828.1.
JF411744 Genomic DNA. Translation: AAC96798.1.
PIRiA40245. VCXECV.
RefSeqiNP_048787.1. NC_000852.5.

Genome annotation databases

GeneIDi917865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M85052 Genomic DNA. Translation: AAA88828.1 .
JF411744 Genomic DNA. Translation: AAC96798.1 .
PIRi A40245. VCXECV.
RefSeqi NP_048787.1. NC_000852.5.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1J5Q X-ray 2.55 A/B 1-437 [» ]
1M3Y X-ray 2.00 A/B/C/D 25-437 [» ]
1M4X electron microscopy 28.00 A/B/C 25-437 [» ]
3KK5 electron microscopy - A/B/C/D/E/F/G/H/I/J/K/L/M 1-437 [» ]
ProteinModelPortali P30328.
SMRi P30328. Positions 25-437.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 917865.

Miscellaneous databases

EvolutionaryTracei P30328.

Family and domain databases

Gene3Di 2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProi IPR016114. ASFV_p72.
IPR016111. Hexon_subdom4.
IPR007542. Virus_major_coat_C.
IPR016112. VP_dsDNA_II.
[Graphical view ]
Pfami PF04451. Capsid_NCLDV. 1 hit.
[Graphical view ]
SUPFAMi SSF49749. SSF49749. 2 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of the major capsid protein and cloning of its gene from algal virus PBCV-1."
    Graves M.V., Meints R.H.
    Virology 188:198-207(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE.
  2. "Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: map positions 182 to 258."
    Kutish G.F., Li Y., Lu Z., Furuta M., Rock D.L., van Etten J.L.
    Virology 223:303-317(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiMCP_PBCV1
AccessioniPrimary (citable) accession number: P30328
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: January 23, 2007
Last modified: October 1, 2014
This is version 81 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3