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P30328

- MCP_PBCV1

UniProt

P30328 - MCP_PBCV1

Protein

Major capsid protein

Gene

A430L

Organism
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 81 (01 Oct 2014)
      Sequence version 3 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Major capsid protein
    Short name:
    MCP
    Alternative name(s):
    VP54
    Gene namesi
    Ordered Locus Names:A430L
    OrganismiParamecium bursaria Chlorella virus 1 (PBCV-1)
    Taxonomic identifieri10506 [NCBI]
    Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePhycodnaviridaeChlorovirus
    Virus hostiChlorella [TaxID: 114049]
    ProteomesiUP000000862: Genome

    Subcellular locationi

    Virion Curated

    GO - Cellular componenti

    1. viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed; by host
    Chaini2 – 437436Major capsid proteinPRO_0000222990Add
    BLAST

    Expressioni

    Keywords - Developmental stagei

    Late protein

    Interactioni

    Subunit structurei

    Homodimer.

    Structurei

    Secondary structure

    1
    437
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi37 – 448
    Beta strandi55 – 595
    Beta strandi64 – 7714
    Helixi88 – 925
    Beta strandi93 – 1008
    Beta strandi103 – 1097
    Helixi110 – 12011
    Helixi123 – 13311
    Beta strandi144 – 1507
    Turni154 – 1563
    Helixi159 – 1613
    Helixi165 – 1673
    Beta strandi173 – 1797
    Turni184 – 1863
    Beta strandi187 – 1893
    Beta strandi201 – 21111
    Helixi213 – 2219
    Beta strandi224 – 2329
    Beta strandi235 – 2373
    Beta strandi243 – 2453
    Beta strandi248 – 2536
    Beta strandi257 – 26711
    Beta strandi284 – 2863
    Turni287 – 2893
    Beta strandi295 – 2973
    Helixi300 – 3023
    Helixi308 – 3103
    Beta strandi313 – 3208
    Beta strandi323 – 3264
    Helixi331 – 3355
    Helixi337 – 3426
    Beta strandi351 – 3588
    Beta strandi362 – 3643
    Helixi371 – 3733
    Beta strandi377 – 3837
    Beta strandi385 – 3884
    Helixi393 – 3964
    Beta strandi403 – 4053
    Helixi406 – 4105
    Beta strandi413 – 42715
    Beta strandi430 – 4345

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1J5QX-ray2.55A/B1-437[»]
    1M3YX-ray2.00A/B/C/D25-437[»]
    1M4Xelectron microscopy28.00A/B/C25-437[»]
    3KK5electron microscopy-A/B/C/D/E/F/G/H/I/J/K/L/M1-437[»]
    ProteinModelPortaliP30328.
    SMRiP30328. Positions 25-437.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP30328.

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni2 – 3130HydrophobicAdd
    BLAST

    Sequence similaritiesi

    Belongs to the NCLDV major capsid protein family.Curated

    Family and domain databases

    Gene3Di2.70.9.10. 1 hit.
    2.70.9.20. 1 hit.
    InterProiIPR016114. ASFV_p72.
    IPR016111. Hexon_subdom4.
    IPR007542. Virus_major_coat_C.
    IPR016112. VP_dsDNA_II.
    [Graphical view]
    PfamiPF04451. Capsid_NCLDV. 1 hit.
    [Graphical view]
    SUPFAMiSSF49749. SSF49749. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P30328-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGGLSQLVA YGAQDVYLTG NPQITFFKTV YRRYTNFAIE SIQQTINGSV    50
    GFGNKVSTQI SRNGDLITDI VVEFVLTKGG NGGTTYYPAE ELLQDVELEI 100
    GGQRIDKHYN DWFRTYDALF RMNDDRYNYR RMTDWVNNEL VGAQKRFYVP 150
    LIFFFNQTPG LALPLIALQY HEVKLYFTLA SQVQGVNYNG SSAIAGAAQP 200
    TMSVWVDYIF LDTQERTRFA QLPHEYLIEQ LQFTGSETAT PSATTQASQN 250
    IRLNFNHPTK YLAWNFNNPT NYGQYTALAN IPGACSGAGT AAATVTTPDY 300
    GNTGTYNEQL AVLDSAKIQL NGQDRFATRK GSYFNKVQPY QSIGGVTPAG 350
    VYLYSFALKP AGRQPSGTCN FSRIDNATLS LTYKTCSIDA TSPAAVLGNT 400
    ETVTANTATL LTALNIYAKN YNVLRIMSGM GGLAYAN 437
    Length:437
    Mass (Da):48,165
    Last modified:January 23, 2007 - v3
    Checksum:i97508AB2500F3A34
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M85052 Genomic DNA. Translation: AAA88828.1.
    JF411744 Genomic DNA. Translation: AAC96798.1.
    PIRiA40245. VCXECV.
    RefSeqiNP_048787.1. NC_000852.5.

    Genome annotation databases

    GeneIDi917865.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M85052 Genomic DNA. Translation: AAA88828.1 .
    JF411744 Genomic DNA. Translation: AAC96798.1 .
    PIRi A40245. VCXECV.
    RefSeqi NP_048787.1. NC_000852.5.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1J5Q X-ray 2.55 A/B 1-437 [» ]
    1M3Y X-ray 2.00 A/B/C/D 25-437 [» ]
    1M4X electron microscopy 28.00 A/B/C 25-437 [» ]
    3KK5 electron microscopy - A/B/C/D/E/F/G/H/I/J/K/L/M 1-437 [» ]
    ProteinModelPortali P30328.
    SMRi P30328. Positions 25-437.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 917865.

    Miscellaneous databases

    EvolutionaryTracei P30328.

    Family and domain databases

    Gene3Di 2.70.9.10. 1 hit.
    2.70.9.20. 1 hit.
    InterProi IPR016114. ASFV_p72.
    IPR016111. Hexon_subdom4.
    IPR007542. Virus_major_coat_C.
    IPR016112. VP_dsDNA_II.
    [Graphical view ]
    Pfami PF04451. Capsid_NCLDV. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49749. SSF49749. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Characterization of the major capsid protein and cloning of its gene from algal virus PBCV-1."
      Graves M.V., Meints R.H.
      Virology 188:198-207(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE.
    2. "Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: map positions 182 to 258."
      Kutish G.F., Li Y., Lu Z., Furuta M., Rock D.L., van Etten J.L.
      Virology 223:303-317(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiMCP_PBCV1
    AccessioniPrimary (citable) accession number: P30328
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 1, 1993
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 81 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3