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P30328 (MCP_PBCV1) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Major capsid protein
Short name=MCP
Alternative name(s):
VP54
Gene names
Ordered Locus Names:A430L
OrganismParamecium bursaria Chlorella virus 1 (PBCV-1) [Reference proteome]
Taxonomic identifier10506 [NCBI]
Taxonomic lineageViruses › dsDNA viruses, no RNA stage › Phycodnaviridae › Chlorovirus
Virus hostChlorella [TaxID: 114049]

Protein attributes

Sequence length437 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Subunit structure

Homodimer.

Subcellular location

Virion Potential.

Sequence similarities

Belongs to the NCLDV major capsid protein family.

Ontologies

Keywords
   Cellular componentVirion
   Developmental stageLate protein
   Molecular functionCapsid protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Cellular_componentviral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed; by host
Chain2 – 437436Major capsid protein
PRO_0000222990

Regions

Region2 – 3130Hydrophobic

Secondary structure

1 .............................................................................. 437
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P30328 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 97508AB2500F3A34

FASTA43748,165
        10         20         30         40         50         60 
MAGGLSQLVA YGAQDVYLTG NPQITFFKTV YRRYTNFAIE SIQQTINGSV GFGNKVSTQI 

        70         80         90        100        110        120 
SRNGDLITDI VVEFVLTKGG NGGTTYYPAE ELLQDVELEI GGQRIDKHYN DWFRTYDALF 

       130        140        150        160        170        180 
RMNDDRYNYR RMTDWVNNEL VGAQKRFYVP LIFFFNQTPG LALPLIALQY HEVKLYFTLA 

       190        200        210        220        230        240 
SQVQGVNYNG SSAIAGAAQP TMSVWVDYIF LDTQERTRFA QLPHEYLIEQ LQFTGSETAT 

       250        260        270        280        290        300 
PSATTQASQN IRLNFNHPTK YLAWNFNNPT NYGQYTALAN IPGACSGAGT AAATVTTPDY 

       310        320        330        340        350        360 
GNTGTYNEQL AVLDSAKIQL NGQDRFATRK GSYFNKVQPY QSIGGVTPAG VYLYSFALKP 

       370        380        390        400        410        420 
AGRQPSGTCN FSRIDNATLS LTYKTCSIDA TSPAAVLGNT ETVTANTATL LTALNIYAKN 

       430 
YNVLRIMSGM GGLAYAN

« Hide

References

« Hide 'large scale' references
[1]"Characterization of the major capsid protein and cloning of its gene from algal virus PBCV-1."
Graves M.V., Meints R.H.
Virology 188:198-207(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE.
[2]"Analysis of 76 kb of the chlorella virus PBCV-1 330-kb genome: map positions 182 to 258."
Kutish G.F., Li Y., Lu Z., Furuta M., Rock D.L., van Etten J.L.
Virology 223:303-317(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		M85052 Genomic DNA. Translation: AAA88828.1.
JF411744 Genomic DNA. Translation: AAC96798.1.
PIRVCXECV. A40245.
RefSeqNP_048787.1. NC_000852.5.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1J5QX-ray2.55A/B1-437[»]
1M3YX-ray2.00A/B/C/D25-437[»]
1M4Xelectron microscopy28.00A/B/C25-437[»]
3KK5electron microscopy-A/B/C/D/E/F/G/H/I/J/K/L/M1-437[»]
ProteinModelPortalP30328.
SMRP30328. Positions 25-437.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID917865.

Phylogenomic databases

ProtClustDBCLSP2510669.

Family and domain databases

Gene3D2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProIPR016114. ASFV_p72.
IPR016111. Hexon_subdom4.
IPR016112. Virus_hexon.
IPR007542. Virus_major_coat_C.
[Graphical view]
PfamPF04451. Capsid_NCLDV. 1 hit.
[Graphical view]
SUPFAMSSF49749. Coat_hexon/vp54/p3_dsDNA-vir. 2 hits.
ProtoNetSearch...

Other

EvolutionaryTraceP30328.

Entry information

Entry nameMCP_PBCV1
AccessionPrimary (citable) accession number: P30328
Entry history
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: January 23, 2007
Last modified: April 3, 2013
This is version 78 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

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