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Protein

Major capsid protein

Gene

A430L

Organism
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Major capsid protein
Short name:
MCP
Alternative name(s):
VP54
Gene namesi
Ordered Locus Names:A430L
OrganismiParamecium bursaria Chlorella virus 1 (PBCV-1)
Taxonomic identifieri10506 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePhycodnaviridaeChlorovirus
Virus hostiChlorella [TaxID: 114049]
Proteomesi
  • UP000000862 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by host
ChainiPRO_00002229902 – 437Major capsid proteinAdd BLAST436

Expressioni

Keywords - Developmental stagei

Late protein

Interactioni

Subunit structurei

Homodimer.

Structurei

Secondary structure

1437
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi37 – 44Combined sources8
Beta strandi55 – 59Combined sources5
Beta strandi64 – 77Combined sources14
Helixi88 – 92Combined sources5
Beta strandi93 – 100Combined sources8
Beta strandi103 – 109Combined sources7
Helixi110 – 120Combined sources11
Helixi123 – 133Combined sources11
Beta strandi144 – 150Combined sources7
Turni154 – 156Combined sources3
Helixi159 – 161Combined sources3
Helixi165 – 167Combined sources3
Beta strandi173 – 179Combined sources7
Turni184 – 186Combined sources3
Beta strandi187 – 189Combined sources3
Beta strandi201 – 211Combined sources11
Helixi213 – 221Combined sources9
Beta strandi224 – 232Combined sources9
Beta strandi235 – 237Combined sources3
Beta strandi243 – 245Combined sources3
Beta strandi248 – 253Combined sources6
Beta strandi257 – 267Combined sources11
Beta strandi284 – 286Combined sources3
Turni287 – 289Combined sources3
Beta strandi295 – 297Combined sources3
Helixi300 – 302Combined sources3
Helixi308 – 310Combined sources3
Beta strandi313 – 320Combined sources8
Beta strandi323 – 326Combined sources4
Helixi331 – 335Combined sources5
Helixi337 – 342Combined sources6
Beta strandi351 – 358Combined sources8
Beta strandi362 – 364Combined sources3
Helixi371 – 373Combined sources3
Beta strandi377 – 383Combined sources7
Beta strandi385 – 388Combined sources4
Helixi393 – 396Combined sources4
Beta strandi403 – 405Combined sources3
Helixi406 – 410Combined sources5
Beta strandi413 – 427Combined sources15
Beta strandi430 – 434Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1J5QX-ray2.55A/B1-437[»]
1M3YX-ray2.00A/B/C/D25-437[»]
1M4Xelectron microscopy28.00A/B/C25-437[»]
3KK5electron microscopy-A/B/C/D/E/F/G/H/I/J/K/L/M1-437[»]
ProteinModelPortaliP30328.
SMRiP30328.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP30328.

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni2 – 31HydrophobicAdd BLAST30

Sequence similaritiesi

Belongs to the NCLDV major capsid protein family.Curated

Family and domain databases

Gene3Di2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProiIPR016114. ASFV_p72.
IPR031654. Capsid_N.
IPR016111. Hexon_subdom4.
IPR007542. Virus_major_coat_C.
IPR016112. VP_dsDNA_II.
[Graphical view]
PfamiPF16903. Capsid_N. 1 hit.
PF04451. Capsid_NCLDV. 1 hit.
[Graphical view]
SUPFAMiSSF49749. SSF49749. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P30328-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGGLSQLVA YGAQDVYLTG NPQITFFKTV YRRYTNFAIE SIQQTINGSV
60 70 80 90 100
GFGNKVSTQI SRNGDLITDI VVEFVLTKGG NGGTTYYPAE ELLQDVELEI
110 120 130 140 150
GGQRIDKHYN DWFRTYDALF RMNDDRYNYR RMTDWVNNEL VGAQKRFYVP
160 170 180 190 200
LIFFFNQTPG LALPLIALQY HEVKLYFTLA SQVQGVNYNG SSAIAGAAQP
210 220 230 240 250
TMSVWVDYIF LDTQERTRFA QLPHEYLIEQ LQFTGSETAT PSATTQASQN
260 270 280 290 300
IRLNFNHPTK YLAWNFNNPT NYGQYTALAN IPGACSGAGT AAATVTTPDY
310 320 330 340 350
GNTGTYNEQL AVLDSAKIQL NGQDRFATRK GSYFNKVQPY QSIGGVTPAG
360 370 380 390 400
VYLYSFALKP AGRQPSGTCN FSRIDNATLS LTYKTCSIDA TSPAAVLGNT
410 420 430
ETVTANTATL LTALNIYAKN YNVLRIMSGM GGLAYAN
Length:437
Mass (Da):48,165
Last modified:January 23, 2007 - v3
Checksum:i97508AB2500F3A34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M85052 Genomic DNA. Translation: AAA88828.1.
JF411744 Genomic DNA. Translation: AAC96798.1.
PIRiA40245. VCXECV.
RefSeqiNP_048787.1. NC_000852.5.

Genome annotation databases

GeneIDi917865.
KEGGivg:917865.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M85052 Genomic DNA. Translation: AAA88828.1.
JF411744 Genomic DNA. Translation: AAC96798.1.
PIRiA40245. VCXECV.
RefSeqiNP_048787.1. NC_000852.5.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1J5QX-ray2.55A/B1-437[»]
1M3YX-ray2.00A/B/C/D25-437[»]
1M4Xelectron microscopy28.00A/B/C25-437[»]
3KK5electron microscopy-A/B/C/D/E/F/G/H/I/J/K/L/M1-437[»]
ProteinModelPortaliP30328.
SMRiP30328.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi917865.
KEGGivg:917865.

Miscellaneous databases

EvolutionaryTraceiP30328.

Family and domain databases

Gene3Di2.70.9.10. 1 hit.
2.70.9.20. 1 hit.
InterProiIPR016114. ASFV_p72.
IPR031654. Capsid_N.
IPR016111. Hexon_subdom4.
IPR007542. Virus_major_coat_C.
IPR016112. VP_dsDNA_II.
[Graphical view]
PfamiPF16903. Capsid_N. 1 hit.
PF04451. Capsid_NCLDV. 1 hit.
[Graphical view]
SUPFAMiSSF49749. SSF49749. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiMCP_PBCV1
AccessioniPrimary (citable) accession number: P30328
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: January 23, 2007
Last modified: November 2, 2016
This is version 91 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.