Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Defensin-like protein 13

Gene

PDF1.1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Confers broad-spectrum resistance to pathogens. Possesses antifungal activity sensitive to inorganic cations in vitro.2 Publications

GO - Biological processi

  • defense response Source: TAIR
  • defense response to fungus Source: UniProtKB-KW
  • killing of cells of other organism Source: UniProtKB-KW

Keywordsi

Molecular functionAntimicrobial, Fungicide
Biological processPlant defense

Names & Taxonomyi

Protein namesi
Recommended name:
Defensin-like protein 13
Alternative name(s):
Anther-specific protein S18 homolog
Cysteine-rich antifungal protein 1
Short name:
AFP1
Low-molecular-weight cysteine-rich protein 67
Short name:
Protein LCR67
Plant defensin 1.1
Gene namesi
Name:PDF1.1
Synonyms:AFP1, LCR67
Ordered Locus Names:At1g75830
ORF Names:T4O12.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G75830.
TAIRilocus:2204365. AT1G75830.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 291 PublicationAdd BLAST29
ChainiPRO_000000701930 – 80Defensin-like protein 13Add BLAST51

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei30Pyrrolidone carboxylic acid1 Publication1
Disulfide bondi33 ↔ 80By similarity
Disulfide bondi44 ↔ 65By similarity
Disulfide bondi50 ↔ 74By similarity
Disulfide bondi54 ↔ 76By similarity

Keywords - PTMi

Disulfide bond, Pyrrolidone carboxylic acid

Proteomic databases

PaxDbiP30224.

Expressioni

Tissue specificityi

Expressed predominantly in siliques and dry seeds.1 Publication

Gene expression databases

ExpressionAtlasiP30224. baseline and differential.
GenevisibleiP30224. AT.

Interactioni

Subunit structurei

Forms oligomers in its native state.

Protein-protein interaction databases

STRINGi3702.AT1G75830.1.

Structurei

3D structure databases

ProteinModelPortaliP30224.
SMRiP30224.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DEFL family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000238637.
InParanoidiP30224.
OMAiFGHACFC.
OrthoDBiEOG09360X3Z.
PhylomeDBiP30224.

Family and domain databases

Gene3Di3.30.30.10. 1 hit.
InterProiView protein in InterPro
IPR008176. Defensin_plant.
IPR003614. Scorpion_toxin-like.
IPR036574. Scorpion_toxin-like_sf.
SMARTiView protein in SMART
SM00505. Knot1. 1 hit.
SUPFAMiSSF57095. SSF57095. 1 hit.
PROSITEiView protein in PROSITE
PS00940. GAMMA_THIONIN. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P30224-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKSATIVTL FFAALVFFAA LEAPMVVEAQ KLCERPSGTW SGVCGNSNAC
60 70 80
KNQCINLEKA RHGSCNYVFP AHKCICYFPC
Length:80
Mass (Da):8,709
Last modified:December 15, 1998 - v3
Checksum:i99F34A8DA360441F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti33C → F in CAA81770 (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF049870 Genomic DNA. Translation: AAD02502.1.
AC007396 Genomic DNA. Translation: AAF26754.1.
CP002684 Genomic DNA. Translation: AEE35763.1.
AY052236 mRNA. Translation: AAK97706.1.
AY060506 mRNA. Translation: AAL31119.1.
X91916 mRNA. Translation: CAA63009.1.
Z27258 mRNA. Translation: CAA81770.1.
Z29957 mRNA. Translation: CAA82845.1.
PIRiF96787.
S28995.
RefSeqiNP_565119.1. NM_106233.4.
UniGeneiAt.128.

Genome annotation databases

EnsemblPlantsiAT1G75830.1; AT1G75830.1; AT1G75830.
GeneIDi843916.
GrameneiAT1G75830.1; AT1G75830.1; AT1G75830.
KEGGiath:AT1G75830.

Similar proteinsi

Entry informationi

Entry nameiDEF13_ARATH
AccessioniPrimary (citable) accession number: P30224
Secondary accession number(s): Q42179
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: December 15, 1998
Last modified: October 25, 2017
This is version 122 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families