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Protein

Uncharacterized protein YbiB

Gene

ybiB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: EcoCyc
  • RNA binding Source: EcoCyc
  • transferase activity, transferring glycosyl groups Source: UniProtKB-KW

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciEcoCyc:EG11580-MONOMER.
ECOL316407:JW0785-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiB
Gene namesi
Name:ybiB
Ordered Locus Names:b0800, JW0785
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11580. ybiB.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001545301 – 320Uncharacterized protein YbiBAdd BLAST320

Proteomic databases

EPDiP30177.
PaxDbiP30177.
PRIDEiP30177.

Interactioni

Protein-protein interaction databases

BioGridi4259965. 9 interactors.
DIPiDIP-11425N.
IntActiP30177. 10 interactors.
STRINGi511145.b0800.

Structurei

Secondary structure

1320
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 10Combined sources8
Helixi22 – 33Combined sources12
Helixi39 – 52Combined sources14
Helixi56 – 67Combined sources12
Beta strandi83 – 87Combined sources5
Beta strandi91 – 94Combined sources4
Helixi98 – 108Combined sources11
Beta strandi112 – 116Combined sources5
Helixi126 – 132Combined sources7
Helixi141 – 149Combined sources9
Beta strandi154 – 157Combined sources4
Helixi158 – 161Combined sources4
Helixi163 – 170Combined sources8
Helixi172 – 175Combined sources4
Helixi180 – 184Combined sources5
Helixi185 – 187Combined sources3
Beta strandi195 – 204Combined sources10
Helixi205 – 207Combined sources3
Helixi208 – 218Combined sources11
Beta strandi222 – 226Combined sources5
Beta strandi231 – 233Combined sources3
Beta strandi242 – 246Combined sources5
Beta strandi249 – 254Combined sources6
Helixi271 – 281Combined sources11
Turni282 – 284Combined sources3
Helixi290 – 302Combined sources13
Helixi309 – 319Combined sources11

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4MUOX-ray1.94A/B1-320[»]
ProteinModelPortaliP30177.
SMRiP30177.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108MTB. Bacteria.
COG0547. LUCA.
HOGENOMiHOG000264819.
InParanoidiP30177.
OMAiEVTARWI.
PhylomeDBiP30177.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
[Graphical view]
PfamiPF02885. Glycos_trans_3N. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.

Sequencei

Sequence statusi: Complete.

P30177-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDYRKIIKEI GRGKNHARDL DRDTARGLYA HMLNGEVPDL ELGGVLIALR
60 70 80 90 100
IKGEGEAEML GFYEAMQNHT IKLTPPAGKP MPIVIPSYNG ARKQANLTPL
110 120 130 140 150
LAILLHKLGF PVVVHGVSED PTRVLTETIF ELMGITPTLH GGQAQAKLDE
160 170 180 190 200
HQPVFMPVGA FCPPLEKQLA MRWRMGVRNS AHTLAKLATP FAEGEALRLS
210 220 230 240 250
SVSHPEYIGR VAKFFSDIGG RALLMHGTEG EVYANPQRCP QINLIDREGM
260 270 280 290 300
RVLYEKQDTA GSELLPQAKD PETTAQWIER CLAGSEPIPE SLKIQMACCL
310 320
VATGEAATIS DGLARVNQAF
Length:320
Mass (Da):35,049
Last modified:April 1, 1993 - v1
Checksum:i81B2A731E0C12390
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. Translation: AAA53656.1.
U00096 Genomic DNA. Translation: AAC73887.1.
AP009048 Genomic DNA. Translation: BAA35466.1.
PIRiH64816.
RefSeqiNP_415321.1. NC_000913.3.
WP_000386551.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73887; AAC73887; b0800.
BAA35466; BAA35466; BAA35466.
GeneIDi945424.
KEGGiecj:JW0785.
eco:b0800.
PATRICi32116803. VBIEscCol129921_0827.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02123 Genomic DNA. Translation: AAA53656.1.
U00096 Genomic DNA. Translation: AAC73887.1.
AP009048 Genomic DNA. Translation: BAA35466.1.
PIRiH64816.
RefSeqiNP_415321.1. NC_000913.3.
WP_000386551.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4MUOX-ray1.94A/B1-320[»]
ProteinModelPortaliP30177.
SMRiP30177.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259965. 9 interactors.
DIPiDIP-11425N.
IntActiP30177. 10 interactors.
STRINGi511145.b0800.

Proteomic databases

EPDiP30177.
PaxDbiP30177.
PRIDEiP30177.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73887; AAC73887; b0800.
BAA35466; BAA35466; BAA35466.
GeneIDi945424.
KEGGiecj:JW0785.
eco:b0800.
PATRICi32116803. VBIEscCol129921_0827.

Organism-specific databases

EchoBASEiEB1540.
EcoGeneiEG11580. ybiB.

Phylogenomic databases

eggNOGiENOG4108MTB. Bacteria.
COG0547. LUCA.
HOGENOMiHOG000264819.
InParanoidiP30177.
OMAiEVTARWI.
PhylomeDBiP30177.

Enzyme and pathway databases

BioCyciEcoCyc:EG11580-MONOMER.
ECOL316407:JW0785-MONOMER.

Miscellaneous databases

PROiP30177.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
[Graphical view]
PfamiPF02885. Glycos_trans_3N. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBIB_ECOLI
AccessioniPrimary (citable) accession number: P30177
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.