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Protein

Inner membrane protein YabI

Gene

yabI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • FtsZ-dependent cytokinesis Source: EcoCyc
  • response to ionizing radiation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11571-MONOMER.
ECOL316407:JW5005-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YabI
Gene namesi
Name:yabI
Ordered Locus Names:b0065, JW5005
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11571. yabI.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 7PeriplasmicSequence analysis7
Transmembranei8 – 28HelicalSequence analysisAdd BLAST21
Transmembranei29 – 49HelicalSequence analysisAdd BLAST21
Topological domaini50 – 58PeriplasmicSequence analysis9
Transmembranei59 – 79HelicalSequence analysisAdd BLAST21
Topological domaini80 – 144CytoplasmicSequence analysisAdd BLAST65
Transmembranei145 – 165HelicalSequence analysisAdd BLAST21
Topological domaini166 – 178PeriplasmicSequence analysisAdd BLAST13
Transmembranei179 – 199HelicalSequence analysisAdd BLAST21
Topological domaini200 – 215CytoplasmicSequence analysisAdd BLAST16
Transmembranei216 – 236HelicalSequence analysisAdd BLAST21
Topological domaini237 – 254PeriplasmicSequence analysisAdd BLAST18

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001614101 – 254Inner membrane protein YabIAdd BLAST254

Proteomic databases

PaxDbiP30149.
PRIDEiP30149.

Interactioni

Protein-protein interaction databases

BioGridi4259728. 225 interactors.
STRINGi511145.b0065.

Structurei

3D structure databases

ProteinModelPortaliP30149.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DedA family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108KF1. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000116766.
InParanoidiP30149.
OMAiLPPYKFA.
PhylomeDBiP30149.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P30149-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQALLEHFIT QSTVYSLMAV VLVAFLESLA LVGLILPGTV LMAGLGALIG
60 70 80 90 100
SGELSFWHAW LAGIIGCLMG DWISFWLGWR FKKPLHRWSF LKKNKALLDK
110 120 130 140 150
TEHALHQHSM FTILVGRFVG PTRPLVPMVA GMLDLPVAKF ITPNIIGCLL
160 170 180 190 200
WPPFYFLPGI LAGAAIDIPA GMQSGEFKWL LLATAVFLWV GGWLCWRLWR
210 220 230 240 250
SGKATDRLSH YLSRGRLLWL TPLISAIGVV ALVVLIRHPL MPVYIDILRK

VVGV
Length:254
Mass (Da):28,244
Last modified:May 30, 2000 - v2
Checksum:iACE6BA969AE462FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73176.1.
AP009048 Genomic DNA. Translation: BAB96634.2.
PIRiA64728.
RefSeqiNP_414607.1. NC_000913.3.
WP_001148390.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73176; AAC73176; b0065.
BAB96634; BAB96634; BAB96634.
GeneIDi944783.
KEGGiecj:JW5005.
eco:b0065.
PATRICi32115231. VBIEscCol129921_0067.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73176.1.
AP009048 Genomic DNA. Translation: BAB96634.2.
PIRiA64728.
RefSeqiNP_414607.1. NC_000913.3.
WP_001148390.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP30149.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259728. 225 interactors.
STRINGi511145.b0065.

Proteomic databases

PaxDbiP30149.
PRIDEiP30149.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73176; AAC73176; b0065.
BAB96634; BAB96634; BAB96634.
GeneIDi944783.
KEGGiecj:JW5005.
eco:b0065.
PATRICi32115231. VBIEscCol129921_0067.

Organism-specific databases

EchoBASEiEB1531.
EcoGeneiEG11571. yabI.

Phylogenomic databases

eggNOGiENOG4108KF1. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000116766.
InParanoidiP30149.
OMAiLPPYKFA.
PhylomeDBiP30149.

Enzyme and pathway databases

BioCyciEcoCyc:EG11571-MONOMER.
ECOL316407:JW5005-MONOMER.

Miscellaneous databases

PROiP30149.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYABI_ECOLI
AccessioniPrimary (citable) accession number: P30149
Secondary accession number(s): P75634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: May 30, 2000
Last modified: November 2, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.