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Protein

Inner membrane protein YabI

Gene

yabI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • FtsZ-dependent cytokinesis Source: EcoCyc
  • response to ionizing radiation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11571-MONOMER.
ECOL316407:JW5005-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YabI
Gene namesi
Name:yabI
Ordered Locus Names:b0065, JW5005
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11571. yabI.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 77PeriplasmicSequence analysis
Transmembranei8 – 2821HelicalSequence analysisAdd
BLAST
Transmembranei29 – 4921HelicalSequence analysisAdd
BLAST
Topological domaini50 – 589PeriplasmicSequence analysis
Transmembranei59 – 7921HelicalSequence analysisAdd
BLAST
Topological domaini80 – 14465CytoplasmicSequence analysisAdd
BLAST
Transmembranei145 – 16521HelicalSequence analysisAdd
BLAST
Topological domaini166 – 17813PeriplasmicSequence analysisAdd
BLAST
Transmembranei179 – 19921HelicalSequence analysisAdd
BLAST
Topological domaini200 – 21516CytoplasmicSequence analysisAdd
BLAST
Transmembranei216 – 23621HelicalSequence analysisAdd
BLAST
Topological domaini237 – 25418PeriplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 254254Inner membrane protein YabIPRO_0000161410Add
BLAST

Proteomic databases

PaxDbiP30149.

Interactioni

Protein-protein interaction databases

BioGridi4259728. 225 interactions.
STRINGi511145.b0065.

Structurei

3D structure databases

ProteinModelPortaliP30149.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DedA family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108KF1. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000116766.
InParanoidiP30149.
OMAiLPPYKFA.
OrthoDBiEOG6JDW72.
PhylomeDBiP30149.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P30149-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQALLEHFIT QSTVYSLMAV VLVAFLESLA LVGLILPGTV LMAGLGALIG
60 70 80 90 100
SGELSFWHAW LAGIIGCLMG DWISFWLGWR FKKPLHRWSF LKKNKALLDK
110 120 130 140 150
TEHALHQHSM FTILVGRFVG PTRPLVPMVA GMLDLPVAKF ITPNIIGCLL
160 170 180 190 200
WPPFYFLPGI LAGAAIDIPA GMQSGEFKWL LLATAVFLWV GGWLCWRLWR
210 220 230 240 250
SGKATDRLSH YLSRGRLLWL TPLISAIGVV ALVVLIRHPL MPVYIDILRK

VVGV
Length:254
Mass (Da):28,244
Last modified:May 30, 2000 - v2
Checksum:iACE6BA969AE462FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73176.1.
AP009048 Genomic DNA. Translation: BAB96634.2.
PIRiA64728.
RefSeqiNP_414607.1. NC_000913.3.
WP_001148390.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73176; AAC73176; b0065.
BAB96634; BAB96634; BAB96634.
GeneIDi944783.
KEGGiecj:JW5005.
eco:b0065.
PATRICi32115231. VBIEscCol129921_0067.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73176.1.
AP009048 Genomic DNA. Translation: BAB96634.2.
PIRiA64728.
RefSeqiNP_414607.1. NC_000913.3.
WP_001148390.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP30149.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259728. 225 interactions.
STRINGi511145.b0065.

Proteomic databases

PaxDbiP30149.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73176; AAC73176; b0065.
BAB96634; BAB96634; BAB96634.
GeneIDi944783.
KEGGiecj:JW5005.
eco:b0065.
PATRICi32115231. VBIEscCol129921_0067.

Organism-specific databases

EchoBASEiEB1531.
EcoGeneiEG11571. yabI.

Phylogenomic databases

eggNOGiENOG4108KF1. Bacteria.
COG0586. LUCA.
HOGENOMiHOG000116766.
InParanoidiP30149.
OMAiLPPYKFA.
OrthoDBiEOG6JDW72.
PhylomeDBiP30149.

Enzyme and pathway databases

BioCyciEcoCyc:EG11571-MONOMER.
ECOL316407:JW5005-MONOMER.

Miscellaneous databases

PROiP30149.

Family and domain databases

InterProiIPR032818. DedA.
IPR032816. SNARE_assoc.
[Graphical view]
PANTHERiPTHR30353. PTHR30353. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region."
    Yura T., Mori H., Nagai H., Nagata T., Ishihama A., Fujita N., Isono K., Mizobuchi K., Nakata A.
    Nucleic Acids Res. 20:3305-3308(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYABI_ECOLI
AccessioniPrimary (citable) accession number: P30149
Secondary accession number(s): P75634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: May 30, 2000
Last modified: April 13, 2016
This is version 115 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.