P29503 (NEUR_DROME) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 120.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein neuralized | ||||||
| Gene names |
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| Organism | Drosophila melanogaster (Fruit fly) [Reference proteome] | ||||||
| Taxonomic identifier | 7227 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora › ![]() |
Protein attributes
| Sequence length | 754 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Involved in neurogenesis. Interacts with other neurogenic proteins in the specification of the neuroblast versus epidermoblast cell fate. |
| Subcellular location | Nucleus Potential. |
| Sequence similarities | Contains 2 NHR (neuralized homology repeat) domains. Contains 1 RING-type zinc finger. |
| Sequence caution | The sequence CAA43806.1 differs from that shown. Reason: Frameshift at positions 406, 518, 554 and 709. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P29503-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P29503-2) The sequence of this isoform differs from the canonical sequence as follows: 672-672: Missing. | ||||||
| Isoform 3 (identifier: P29503-3) The sequence of this isoform differs from the canonical sequence as follows: 1-90: MGLSDIPANY...LKKIKKRFGL → MGQSAGKI | ||||||
| Isoform 4 (identifier: P29503-4) The sequence of this isoform differs from the canonical sequence as follows: 1-90: MGLSDIPANY...LKKIKKRFGL → MGQSAGKI 672-672: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 754 | 754 | Protein neuralized | PRO_0000055975 | |||||||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||||||
| Domain | 106 – 260 | 155 | NHR 1 | ||||||||||||||||||||||||||||||||||||||
| Domain | 368 – 523 | 156 | NHR 2 | ||||||||||||||||||||||||||||||||||||||
| Zinc finger | 701 – 742 | 42 | RING-type | ||||||||||||||||||||||||||||||||||||||
| Compositional bias | 23 – 55 | 33 | Gln-rich | ||||||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||||||
| Modified residue | 338 | 1 | Phosphoserine Ref.7 | ||||||||||||||||||||||||||||||||||||||
| Modified residue | 341 | 1 | Phosphoserine Ref.7 | ||||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 90 | 90 | MGLSD…KRFGL → MGQSAGKI in isoform 3 and isoform 4. | VSP_008045 | |||||||||||||||||||||||||||||||||||||
| Alternative sequence | 672 | 1 | Missing in isoform 2 and isoform 4. | VSP_008046 | |||||||||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 234 | 1 | T → S in CAA43806. Ref.1 | ||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 270 | 1 | A → V in AAB27151. Ref.3 | ||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 588 | 1 | T → N in AAB27151. Ref.3 | ||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 694 | 1 | S → R in AAB27151. Ref.3 | ||||||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||||||
| Beta strand | 109 – 113 | 5 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 117 – 119 | 3 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 126 – 128 | 3 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 136 – 141 | 6 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 149 – 155 | 7 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 158 – 162 | 5 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 165 – 171 | 7 | |||||||||||||||||||||||||||||||||||||||
| Helix | 173 – 175 | 3 | |||||||||||||||||||||||||||||||||||||||
| Turn | 176 – 178 | 3 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 182 – 186 | 5 | |||||||||||||||||||||||||||||||||||||||
| Helix | 187 – 190 | 4 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 209 – 214 | 6 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 220 – 226 | 7 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 228 – 233 | 6 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 243 – 247 | 5 | |||||||||||||||||||||||||||||||||||||||
| Beta strand | 253 – 258 | 6 | |||||||||||||||||||||||||||||||||||||||
| Helix | 260 – 263 | 4 | |||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The Drosophila neurogenic gene neuralized encodes a novel protein and is expressed in precursors of larval and adult neurons." Boulianne G.L., de la Concha A., Campos-Ortega J.A., Jan L.Y., Jan Y.N. EMBO J. 10:2975-2983(1991) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 2). Strain: Oregon-R. |
| [2] | Erratum Boulianne G.L., de la Concha A., Campos-Ortega J.A., Jan L.Y., Jan Y.N. EMBO J. 12:2586-2586(1993) [PubMed] [Europe PMC] [Abstract] |
| [3] | "The Drosophila neuralized gene encodes a C3HC4 zinc finger." Price B.D., Chang Z., Smith R., Bockheim S., Laughon A. EMBO J. 12:2411-2418(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). |
| [4] | "The genome sequence of Drosophila melanogaster." Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. Venter J.C.Science 287:2185-2195(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Berkeley. |
| [5] | "Annotation of the Drosophila melanogaster euchromatic genome: a systematic review." Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. Lewis S.E.Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed] [Europe PMC] [Abstract] Cited for: GENOME REANNOTATION. Strain: Berkeley. |
| [6] | "A Drosophila full-length cDNA resource." Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H., Rubin G.M., Celniker S.E. Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Strain: Berkeley. |
| [7] | "Phosphoproteome analysis of Drosophila melanogaster embryos." Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P. J. Proteome Res. 7:1675-1682(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-338 AND SER-341, MASS SPECTROMETRY. Tissue: Embryo. |
| [8] | "Solution structure of the neuz (NHR) domain in neuralized from Drosophila melanogaster." RIKEN structural genomics initiative (RSGI) Submitted (OCT-2007) to the PDB data bank Cited for: STRUCTURE BY NMR OF 106-266. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | X61617 Genomic DNA. Translation: CAA43806.1. Frameshift. S62597 mRNA. Translation: AAB27151.1. S62583 mRNA. Translation: AAB27147.1. L12218 mRNA. Translation: AAA28403.1. AE014297 Genomic DNA. Translation: AAF54330.1. AE014297 Genomic DNA. Translation: AAF54326.2. AE014297 Genomic DNA. Translation: AAN13406.1. AE014297 Genomic DNA. Translation: AAN13407.1. AY051987 mRNA. Translation: AAK93411.1. BT003772 mRNA. Translation: AAO41451.1. | ||||||||||||
| PIR | S35371. S35503. | ||||||||||||
| RefSeq | NP_001163563.1. NM_001170092.2. NP_476652.1. NM_057304.4. NP_731309.1. NM_169255.2. NP_731310.1. NM_169256.2. NP_731311.1. NM_169257.2. | ||||||||||||
| UniGene | Dm.1114. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | P29503. | ||||||||||||
| SMR | P29503. Positions 106-266, 362-525, 685-746. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-17176N. | ||||||||||||
| IntAct | P29503. 2 interactions. | ||||||||||||
| MINT | MINT-336530. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P29503. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| EnsemblMetazoa | FBtr0082003; FBpp0081481; FBgn0002932. | ||||||||||||
| GeneID | 41085. | ||||||||||||
| KEGG | dme:Dmel_CG11988. | ||||||||||||
| UCSC | CG11988-RA. d. melanogaster. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 41085. | ||||||||||||
| FlyBase | FBgn0002932. neur. | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG145384. | ||||||||||||
| GeneTree | ENSGT00530000063117. | ||||||||||||
| InParanoid | P29503. | ||||||||||||
| KO | K01931. | ||||||||||||
| OMA | AIPCGPR. | ||||||||||||
| OrthoDB | EOG4S1RPB. | ||||||||||||
| PhylomeDB | P29503. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| Reactome | REACT_97910. Signal Transduction. | ||||||||||||
| SignaLink | P29503. | ||||||||||||
Gene expression databases | |||||||||||||
| Bgee | P29503. | ||||||||||||
| GermOnline | CG11988. Drosophila melanogaster. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.40.10. 1 hit. | ||||||||||||
| InterPro | IPR006573. Neu_Z. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. [Graphical view] | ||||||||||||
| Pfam | PF07177. Neuralized. 2 hits. [Graphical view] | ||||||||||||
| SMART | SM00588. NEUZ. 2 hits. SM00184. RING. 1 hit. [Graphical view] | ||||||||||||
| PROSITE | PS51065. NHR. 2 hits. PS00518. ZF_RING_1. False negative. PS50089. ZF_RING_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | Nrt. drosophila. | ||||||||||||
| EvolutionaryTrace | P29503. | ||||||||||||
| GenomeRNAi | 41085. | ||||||||||||
| NextBio | 822080. | ||||||||||||
Entry information
| Entry name | NEUR_DROME | ||||||||
| Accession | Primary (citable) accession number: P29503 Secondary accession number(s): Q26306 Q960M1 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Drosophila annotation project | ||||||||
Relevant documents
| Drosophila Drosophila: entries, gene names and cross-references to FlyBase |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
