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Reviewed, UniProtKB/Swiss-Prot P29395 (RL11_THEMA)

Last modified November 3, 2009. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    50S ribosomal protein L11
Gene names
Name: rplK
Ordered Locus Names: TM_0454
OrganismThermotoga maritima [Complete proteome] [HAMAP]
Taxonomic identifier2336 [NCBI]
Taxonomic lineageBacteriaThermotogaeThermotogalesThermotogaceaeThermotoga

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

This protein binds directly to 23S ribosomal RNA. HAMAP MF_00736

Post-translational modification

One or more lysine residues are methylated By similarity.

Sequence similarities

Belongs to the ribosomal protein L11P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   PTMMethylation
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed HAMAP MF_00736
Chain2 – 14114050S ribosomal protein L11 HAMAP MF_00736
PRO_0000104397

Secondary structure

.......................... 141
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P29395-1 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 08AD83D090F651A9

FASTA14115,089
        10         20         30         40         50         60 
MAKKVAAQIK LQLPAGKATP APPVGPALGQ HGVNIMEFCK RFNAETADKA GMILPVVITV 

        70         80         90        100        110        120 
YEDKSFTFII KTPPASFLLK KAAGIEKGSS EPKRKIVGKV TRKQIEEIAK TKMPDLNANS 

       130        140 
LEAAMKIIEG TAKSMGIEVV D 

« Hide

References

« Hide 'large scale' references
[1]"The organization and expression of essential transcription translation component genes in the extremely thermophilic eubacterium Thermotoga maritima."
Liao D., Dennis P.P.
J. Biol. Chem. 267:22787-22797(1992) [PubMed: 1429627] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.
[2]"Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima."
Nelson K.E., Clayton R.A., Gill S.R., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Nelson W.C., Ketchum K.A., McDonald L.A., Utterback T.R., Malek J.A., Linher K.D., Garrett M.M., Stewart A.M., Cotton M.D., Pratt M.S. expand/collapse author list , Phillips C.A., Richardson D.L., Heidelberg J.F., Sutton G.G., Fleischmann R.D., Eisen J.A., White O., Salzberg S.L., Smith H.O., Venter J.C., Fraser C.M.
Nature 399:323-329(1999) [PubMed: 10360571] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.
[3]"A detailed view of a ribosomal active site: the structure of the L11-RNA complex."
Wimberly B.T., Guymon R., McCutcheon J.P., White S.W., Ramakrishnan V.
Cell 97:491-502(1999) [PubMed: 10338213] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.57 ANGSTROMS).
+Additional computationally mapped references.

Cross-references

Sequence databases

Z11839 Genomic DNA. Translation: CAA77859.1.
AE000512 Genomic DNA. Translation: AAD35537.1.
PIRR5HG11. B44466.
RefSeqNP_228264.1.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1EG0electron microscopy11.50K1-140[»]
1IP8model-G-[»]
1JQMelectron microscopy-A2-139[»]
1JQSelectron microscopy-A2-139[»]
1JQTelectron microscopy-A2-139[»]
1MMSX-ray2.57A/B2-141[»]
1MVRelectron microscopy12.80L2-140[»]
1OLNNMR-A2-141[»]
1PN7electron microscopy10.80L8-139[»]
1PN8electron microscopy10.80L8-139[»]
1R2Welectron microscopy9.00A2-140[»]
1R2Xelectron microscopy9.00A2-140[»]
2B66X-ray5.90K1-141[»]
2B9NX-ray6.76K1-141[»]
2B9PX-ray6.46K1-141[»]
2BCWelectron microscopy11.20A8-71[»]
2GKYmodel-A8-140[»]
2GKZmodel-A8-140[»]
2JQ7NMR-A1-141[»]
2K3FNMR-A1-141[»]
ModBaseSearch...

Genome annotation databases

GeneID897484.
GenomeReviewsGene locus TM_0454 in contig AE000512_GR.
KEGGtma:TM0454.
NMPDRfig|243274.1.peg.448.
TIGRTM_0454.

Phylogenomic databases

HOGENOMP29395.
OMAMGLQVEG.

Enzyme and pathway databases

BioCycTMAR243274:TM_0454-MON.

Family and domain databases

HAMAPMF_00736.
[Tree]
InterProIPR000911. Ribosomal_L11.
IPR006519. Ribosomal_L11_bac-type.
[Graphical view]
Gene3DG3DSA:1.10.10.250. Ribosomal_L11. 1 hit.
PANTHERPTHR11661:SF1. Ribosom_L11_bac. 1 hit.
PTHR11661. Ribosomal_L11. 1 hit.
PfamPF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]
ProDomPD001367. Ribosomal_L11. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00649. RL11. 1 hit.
[Graphical view]
TIGRFAMsTIGR01632. L11_bact. 1 hit.
PROSITEPS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL11_THEMA
AccessionPrimary (citable) accession number: P29395
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: January 23, 2007
Last modified: November 3, 2009
This is version 78 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents