50S ribosomal protein L11 - Thermotoga maritima

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P29395 (RL11_THEMA) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 94. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
50S ribosomal protein L11

Gene names

Name:	rplK
Ordered Locus Names:	TM_0454

Organism

Thermotoga maritima

Taxonomic identifier

2336 [NCBI]

Taxonomic lineage

Bacteria › Thermotogae › Thermotogales › Thermotogaceae › Thermotoga

Protein attributes

Sequence length	141 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	This protein binds directly to 23S ribosomal RNA. HAMAP MF_00736_B
Post-translational modification	One or more lysine residues are methylated By similarity. HAMAP MF_00736_B
Sequence similarities	Belongs to the ribosomal protein L11P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
PTM	Methylation
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Initiator methionine

Removed HAMAP MF_00736_B

Chain

2 – 141

140

50S ribosomal protein L11 HAMAP MF_00736_B

PRO_0000104397

Secondary structure

141

Helix Strand Turn

Details...

Sequences

Sequence

Length

Mass (Da)

Tools

P29395 [UniParc].

Last modified January 23, 2007. Version 3.
Checksum: 08AD83D090F651A9
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FASTA

141

15,089

        10         20         30         40         50         60 
MAKKVAAQIK LQLPAGKATP APPVGPALGQ HGVNIMEFCK RFNAETADKA GMILPVVITV 

        70         80         90        100        110        120 
YEDKSFTFII KTPPASFLLK KAAGIEKGSS EPKRKIVGKV TRKQIEEIAK TKMPDLNANS 

       130        140 
LEAAMKIIEG TAKSMGIEVV D

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The organization and expression of essential transcription translation component genes in the extremely thermophilic eubacterium Thermotoga maritima." Liao D., Dennis P.P. J. Biol. Chem. 267:22787-22797(1992) [PubMed: 1429627] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.
[2]	"Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima." Nelson K.E., Clayton R.A., Gill S.R., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Nelson W.C., Ketchum K.A., McDonald L.A., Utterback T.R., Malek J.A., Linher K.D., Garrett M.M., Stewart A.M., Cotton M.D., Pratt M.S. Fraser C.M. Nature 399:323-329(1999) [PubMed: 10360571] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099.
[3]	"A detailed view of a ribosomal active site: the structure of the L11-RNA complex." Wimberly B.T., Guymon R., McCutcheon J.P., White S.W., Ramakrishnan V. Cell 97:491-502(1999) [PubMed: 10338213] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.57 ANGSTROMS).
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

Z11839 Genomic DNA. Translation: CAA77859.1.
AE000512 Genomic DNA. Translation: AAD35537.1.

PIR

R5HG11. B44466.

RefSeq

NP_228264.1. NC_000853.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1EG0	electron microscopy	11.50	K	1-140	[»]
1IP8	model	-	G	-	[»]
1JQM	electron microscopy	-	A	2-139	[»]
1JQS	electron microscopy	-	A	2-139	[»]
1JQT	electron microscopy	-	A	2-139	[»]
1MMS	X-ray	2.57	A/B	2-141	[»]
1MVR	electron microscopy	12.80	L	2-140	[»]
1OLN	NMR	-	A	2-141	[»]
1PN7	electron microscopy	10.80	L	8-139	[»]
1PN8	electron microscopy	10.80	L	8-139	[»]
1R2W	electron microscopy	9.00	A	2-140	[»]
1R2X	electron microscopy	9.00	A	2-140	[»]
2BCW	electron microscopy	11.20	A	8-71	[»]
2GKY	model	-	A	8-140	[»]
2GKZ	model	-	A	8-140	[»]
2JQ7	NMR	-	A	1-141	[»]
2K3F	NMR	-	A	1-141	[»]

ProteinModelPortal

P29395.

SMR

P29395. Positions 1-141.

ModBase

Search...

Protein-protein interaction databases

MINT

MINT-208764.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

897484.

GenomeReviews

Gene locus TM_0454 in contig AE000512_GR.

KEGG

tma:TM0454.

NMPDR

fig|243274.1.peg.448.

PATRIC

23935803. VBITheMar51294_0460.

TIGR

TM_0454.

Phylogenomic databases

HOGENOM

HBG594170.

OMA

QYNAATE.

PhylomeDB

P29395.

ProtClustDB

PRK00140.

Enzyme and pathway databases

BioCyc

TMAR243274:TM_0454-MONOMER.

Family and domain databases

HAMAP

MF_00736_B. Ribosomal_L11_B.
[Tree]

InterPro

IPR000911. Ribosomal_L11.
IPR006519. Ribosomal_L11_bac-typ.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]

Gene3D

G3DSA:1.10.10.250. Ribosomal_L11. 1 hit.
G3DSA:3.30.1550.10. Ribosomal_L11_N. 1 hit.

K02867.

PANTHER

PTHR11661. Ribosomal_L11. 1 hit.

Pfam

PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]

SMART

SM00649. RL11. 1 hit.
[Graphical view]

SUPFAM

SSF46906. Ribosomal_L11. 1 hit.
SSF54747. Ribosomal_L11. 1 hit.

TIGRFAMs

TIGR01632. L11_bact. 1 hit.

PROSITE

PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

RL11_THEMA

Accession

Primary (citable) accession number: P29395

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 1, 1992
Last sequence update:	January 23, 2007
Last modified:	January 25, 2012
This is version 94 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Secondary structure

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information

Relevant documents