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Protein

Agamous-like MADS-box protein AGL3

Gene

AGL3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Probable transcription factor.

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • carpel development Source: TAIR
  • maintenance of floral meristem identity Source: TAIR
  • petal development Source: TAIR
  • sepal development Source: TAIR
  • stamen development Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agamous-like MADS-box protein AGL3
Gene namesi
Name:AGL3
Ordered Locus Names:At2g03710
ORF Names:F19B11.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G03710.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 258258Agamous-like MADS-box protein AGL3PRO_0000199458Add
BLAST

Proteomic databases

PaxDbiP29383.
PRIDEiP29383.

Expressioni

Gene expression databases

GenevisibleiP29383. AT.

Interactioni

Protein-protein interaction databases

BioGridi299. 10 interactions.
DIPiDIP-33748N.
IntActiP29383. 10 interactions.
STRINGi3702.AT2G03710.1.

Structurei

3D structure databases

ProteinModelPortaliP29383.
SMRiP29383. Positions 2-60, 93-174.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 5755MADS-boxPROSITE-ProRule annotationAdd
BLAST
Domaini88 – 17891K-boxPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 K-box domain.PROSITE-ProRule annotation
Contains 1 MADS-box domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiP29383.
OMAiIQEAGFF.
OrthoDBiEOG09360JNU.
PhylomeDBiP29383.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: P29383-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN
60 70 80 90 100
RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
110 120 130 140 150
RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ
160 170 180 190 200
LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
210 220 230 240 250
GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN

GFFPGWMV
Length:258
Mass (Da):29,573
Last modified:December 15, 1998 - v2
Checksum:iA642CA7EA58AB38D
GO
Isoform 2 (identifier: P29383-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     172-258: LEDSDAALTQ...VNGFFPGWMV → VAIGIFYRKKLKPFVI

Note: No experimental confirmation available.
Show »
Length:187
Mass (Da):21,934
Checksum:iF02166DACB15265B
GO
Isoform 3 (identifier: P29383-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     229-229: Missing.

Show »
Length:257
Mass (Da):29,486
Checksum:i09D3131DD87437E1
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti58 – 9235Missing (PubMed:1672119).CuratedAdd
BLAST

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei172 – 25887LEDSD…PGWMV → VAIGIFYRKKLKPFVI in isoform 2. 1 PublicationVSP_008908Add
BLAST
Alternative sequencei229 – 2291Missing in isoform 3. 1 PublicationVSP_041587

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U81369 mRNA. Translation: AAB38975.1.
AY141229 mRNA. Translation: AAN52793.1.
AC006836 Genomic DNA. Translation: AAD20073.1.
CP002685 Genomic DNA. Translation: AEC05738.1.
CP002685 Genomic DNA. Translation: AEC05739.1.
CP002685 Genomic DNA. Translation: AEC05740.1.
AY063894 mRNA. Translation: AAL36250.1.
AY096386 mRNA. Translation: AAM20027.1.
PIRiS57793.
RefSeqiNP_178466.1. NM_126418.2. [P29383-1]
NP_849930.1. NM_179599.1. [P29383-3]
NP_973411.1. NM_201682.2. [P29383-2]
UniGeneiAt.10200.

Genome annotation databases

EnsemblPlantsiAT2G03710.1; AT2G03710.1; AT2G03710. [P29383-1]
GeneIDi814898.
KEGGiath:AT2G03710.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U81369 mRNA. Translation: AAB38975.1.
AY141229 mRNA. Translation: AAN52793.1.
AC006836 Genomic DNA. Translation: AAD20073.1.
CP002685 Genomic DNA. Translation: AEC05738.1.
CP002685 Genomic DNA. Translation: AEC05739.1.
CP002685 Genomic DNA. Translation: AEC05740.1.
AY063894 mRNA. Translation: AAL36250.1.
AY096386 mRNA. Translation: AAM20027.1.
PIRiS57793.
RefSeqiNP_178466.1. NM_126418.2. [P29383-1]
NP_849930.1. NM_179599.1. [P29383-3]
NP_973411.1. NM_201682.2. [P29383-2]
UniGeneiAt.10200.

3D structure databases

ProteinModelPortaliP29383.
SMRiP29383. Positions 2-60, 93-174.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi299. 10 interactions.
DIPiDIP-33748N.
IntActiP29383. 10 interactions.
STRINGi3702.AT2G03710.1.

Proteomic databases

PaxDbiP29383.
PRIDEiP29383.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G03710.1; AT2G03710.1; AT2G03710. [P29383-1]
GeneIDi814898.
KEGGiath:AT2G03710.

Organism-specific databases

TAIRiAT2G03710.

Phylogenomic databases

eggNOGiKOG0014. Eukaryota.
COG5068. LUCA.
HOGENOMiHOG000155301.
InParanoidiP29383.
OMAiIQEAGFF.
OrthoDBiEOG09360JNU.
PhylomeDBiP29383.

Miscellaneous databases

PROiP29383.

Gene expression databases

GenevisibleiP29383. AT.

Family and domain databases

InterProiIPR002487. TF_Kbox.
IPR002100. TF_MADSbox.
[Graphical view]
PfamiPF01486. K-box. 1 hit.
PF00319. SRF-TF. 1 hit.
[Graphical view]
PRINTSiPR00404. MADSDOMAIN.
SMARTiSM00432. MADS. 1 hit.
[Graphical view]
SUPFAMiSSF55455. SSF55455. 1 hit.
PROSITEiPS51297. K_BOX. 1 hit.
PS00350. MADS_BOX_1. 1 hit.
PS50066. MADS_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAGL3_ARATH
AccessioniPrimary (citable) accession number: P29383
Secondary accession number(s): O04729
, Q41252, Q7XJL0, Q8VZR9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 15, 1998
Last modified: September 7, 2016
This is version 138 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.