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Protein

40S ribosomal protein S9

Gene

Rps9

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • 5.8S rRNA binding Source: RGD
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S9
Gene namesi
Name:Rps9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi619889. Rps9.

Subcellular locationi

  • Cytoplasm By similarity

  • Note: Localized in cytoplasmic mRNP granules containing untranslated mRNAs.By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001326922 – 19440S ribosomal protein S9Add BLAST193

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei66N6-acetyllysineBy similarity1
Modified residuei116N6-acetyllysineBy similarity1
Modified residuei153PhosphoserineBy similarity1
Modified residuei155N6-acetyllysineBy similarity1
Modified residuei163PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiP29314.
PRIDEiP29314.

PTM databases

iPTMnetiP29314.
PhosphoSitePlusiP29314.

Expressioni

Gene expression databases

BgeeiENSRNOG00000011355.
GenevisibleiP29314. RN.

Interactioni

Subunit structurei

Identified in a IGF2BP1-dependent mRNP granule complex containing untranslated mRNAs.By similarity

Protein-protein interaction databases

IntActiP29314. 1 interactor.
MINTiMINT-4576900.
STRINGi10116.ENSRNOP00000031156.

Structurei

3D structure databases

ProteinModelPortaliP29314.
SMRiP29314.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini108 – 182S4 RNA-bindingPROSITE-ProRule annotationAdd BLAST75

Sequence similaritiesi

Belongs to the ribosomal protein S4P family.Curated
Contains 1 S4 RNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG3301. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000074829.
HOGENOMiHOG000194525.
HOVERGENiHBG001135.
InParanoidiP29314.
KOiK02997.
OMAiTIVYRKG.
OrthoDBiEOG091G0S57.
PhylomeDBiP29314.
TreeFamiTF300795.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR005710. Ribosomal_S4/S9_euk/arc.
IPR001912. Ribosomal_S4/S9_N.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01018. uS4_arch. 1 hit.
PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P29314-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVARSWVCR KTYVTPRRPF EKSRLDQELK LIGEYGLRNK REVWRVKFTL
60 70 80 90 100
AKIRKAAREL LTLDEKDPRR LFEGNALLRR LVRIGVLDEG KMKLDYILGL
110 120 130 140 150
KIEDFLERRL QTQVFKLGLA KSIHHARVLI RQRHIRVRKQ VVNIPSFIVR
160 170 180 190
LDSQKHIDFS LRSPYGGGRP GRVKRKNAKK GQGGAGAGDD EEED
Length:194
Mass (Da):22,591
Last modified:January 23, 2007 - v4
Checksum:iE9CE3CBD59524F81
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti138R → L in CAA47013 (PubMed:8503895).Curated1
Sequence conflicti162R → L in CAA47013 (PubMed:8503895).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66370 mRNA. Translation: CAA47013.1.
BC060560 mRNA. Translation: AAH60560.1.
PIRiJN0587. S21497.
RefSeqiNP_001300864.1. NM_001313935.1.
NP_112370.2. NM_031108.4.
UniGeneiRn.109735.
Rn.225908.

Genome annotation databases

EnsembliENSRNOT00000086622; ENSRNOP00000074779; ENSRNOG00000058909.
ENSRNOT00000090819; ENSRNOP00000075462; ENSRNOG00000058909.
GeneIDi103689992.
81772.
KEGGirno:103689992.
rno:81772.
UCSCiRGD:619889. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66370 mRNA. Translation: CAA47013.1.
BC060560 mRNA. Translation: AAH60560.1.
PIRiJN0587. S21497.
RefSeqiNP_001300864.1. NM_001313935.1.
NP_112370.2. NM_031108.4.
UniGeneiRn.109735.
Rn.225908.

3D structure databases

ProteinModelPortaliP29314.
SMRiP29314.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP29314. 1 interactor.
MINTiMINT-4576900.
STRINGi10116.ENSRNOP00000031156.

PTM databases

iPTMnetiP29314.
PhosphoSitePlusiP29314.

Proteomic databases

PaxDbiP29314.
PRIDEiP29314.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000086622; ENSRNOP00000074779; ENSRNOG00000058909.
ENSRNOT00000090819; ENSRNOP00000075462; ENSRNOG00000058909.
GeneIDi103689992.
81772.
KEGGirno:103689992.
rno:81772.
UCSCiRGD:619889. rat.

Organism-specific databases

CTDi6203.
RGDi619889. Rps9.

Phylogenomic databases

eggNOGiKOG3301. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000074829.
HOGENOMiHOG000194525.
HOVERGENiHBG001135.
InParanoidiP29314.
KOiK02997.
OMAiTIVYRKG.
OrthoDBiEOG091G0S57.
PhylomeDBiP29314.
TreeFamiTF300795.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP29314.

Gene expression databases

BgeeiENSRNOG00000011355.
GenevisibleiP29314. RN.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR005710. Ribosomal_S4/S9_euk/arc.
IPR001912. Ribosomal_S4/S9_N.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01018. uS4_arch. 1 hit.
PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS9_RAT
AccessioniPrimary (citable) accession number: P29314
Secondary accession number(s): Q6P9W7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 135 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.