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Protein

40S ribosomal protein S9

Gene

Rps9

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • 5.8S rRNA binding Source: RGD
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S9
Gene namesi
Name:Rps9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi619889. Rps9.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001326921 – 19440S ribosomal protein S9Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei66N6-acetyllysineBy similarity1
Cross-linki93Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei116N6-acetyllysineBy similarity1
Cross-linki139Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei153PhosphoserineBy similarity1
Modified residuei155N6-acetyllysineBy similarity1
Modified residuei163PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP29314.
PRIDEiP29314.

PTM databases

iPTMnetiP29314.
PhosphoSitePlusiP29314.

Expressioni

Gene expression databases

BgeeiENSRNOG00000058909.
GenevisibleiP29314. RN.

Interactioni

Subunit structurei

Identified in a IGF2BP1-dependent mRNP granule complex containing untranslated mRNAs.By similarity

Protein-protein interaction databases

BioGridi249644. 1 interactor.
IntActiP29314. 1 interactor.
MINTiMINT-4576900.
STRINGi10116.ENSRNOP00000031156.

Structurei

3D structure databases

ProteinModelPortaliP29314.
SMRiP29314.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini108 – 182S4 RNA-bindingPROSITE-ProRule annotationAdd BLAST75

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3301. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000074829.
HOGENOMiHOG000194525.
HOVERGENiHBG001135.
InParanoidiP29314.
KOiK02997.
OMAiTHGHIAI.
OrthoDBiEOG091G0S57.
PhylomeDBiP29314.
TreeFamiTF300795.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiView protein in InterPro
IPR022801. Ribosomal_S4/S9.
IPR005710. Ribosomal_S4/S9_euk/arc.
IPR001912. Ribosomal_S4/S9_N.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiView protein in Pfam
PF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
SMARTiView protein in SMART
SM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
TIGRFAMsiTIGR01018. uS4_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.

Sequencei

Sequence statusi: Complete.

P29314-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVARSWVCR KTYVTPRRPF EKSRLDQELK LIGEYGLRNK REVWRVKFTL
60 70 80 90 100
AKIRKAAREL LTLDEKDPRR LFEGNALLRR LVRIGVLDEG KMKLDYILGL
110 120 130 140 150
KIEDFLERRL QTQVFKLGLA KSIHHARVLI RQRHIRVRKQ VVNIPSFIVR
160 170 180 190
LDSQKHIDFS LRSPYGGGRP GRVKRKNAKK GQGGAGAGDD EEED
Length:194
Mass (Da):22,591
Last modified:January 23, 2007 - v4
Checksum:iE9CE3CBD59524F81
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti138R → L in CAA47013 (PubMed:8503895).Curated1
Sequence conflicti162R → L in CAA47013 (PubMed:8503895).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66370 mRNA. Translation: CAA47013.1.
BC060560 mRNA. Translation: AAH60560.1.
PIRiJN0587. S21497.
RefSeqiNP_001300864.1. NM_001313935.1.
NP_112370.2. NM_031108.4.
UniGeneiRn.109735.
Rn.225908.

Genome annotation databases

EnsembliENSRNOT00000086622; ENSRNOP00000074779; ENSRNOG00000058909.
ENSRNOT00000090819; ENSRNOP00000075462; ENSRNOG00000058909.
GeneIDi103689992.
81772.
KEGGirno:103689992.
rno:81772.
UCSCiRGD:619889. rat.

Similar proteinsi

Entry informationi

Entry nameiRS9_RAT
AccessioniPrimary (citable) accession number: P29314
Secondary accession number(s): Q6P9W7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: January 23, 2007
Last modified: September 27, 2017
This is version 143 of the entry and version 4 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families