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P29208

- MENC_ECOLI

UniProt

P29208 - MENC_ECOLI

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Protein
o-succinylbenzoate synthase
Gene
menC, b2261, JW2256
Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Converts SHCHC to OSB.UniRule annotation

Catalytic activityi

(1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate = 2-succinylbenzoate + H2O.UniRule annotation

Cofactori

Magnesium.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei133 – 1331Proton donor
Metal bindingi161 – 1611Magnesium
Metal bindingi190 – 1901Magnesium
Metal bindingi213 – 2131Magnesium
Active sitei235 – 2351Proton acceptor

GO - Molecular functioni

  1. hydro-lyase activity Source: EcoCyc
  2. magnesium ion binding Source: InterPro

GO - Biological processi

  1. menaquinone biosynthetic process Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Menaquinone biosynthesis

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER.
ECOL316407:JW2256-MONOMER.
MetaCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER.
BRENDAi4.2.1.113. 2026.
SABIO-RKP29208.
UniPathwayiUPA00079; UER00165.

Names & Taxonomyi

Protein namesi
Recommended name:
o-succinylbenzoate synthase (EC:4.2.1.113)
Short name:
OSB synthase
Short name:
OSBS
Alternative name(s):
4-(2'-carboxyphenyl)-4-oxybutyric acid synthase
o-succinylbenzoic acid synthase
Gene namesi
Name:menC
Ordered Locus Names:b2261, JW2256
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG11532. menC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 320320o-succinylbenzoate synthaseUniRule annotation
PRO_0000171270Add
BLAST

Proteomic databases

PaxDbiP29208.

Expressioni

Gene expression databases

GenevestigatoriP29208.

Interactioni

Protein-protein interaction databases

IntActiP29208. 5 interactions.
MINTiMINT-1305669.
STRINGi511145.b2261.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 1312
Beta strandi26 – 3611
Beta strandi39 – 457
Turni49 – 513
Beta strandi52 – 543
Helixi56 – 7015
Helixi81 – 9414
Beta strandi109 – 1113
Helixi114 – 1229
Beta strandi126 – 1338
Beta strandi135 – 1373
Helixi139 – 15214
Beta strandi156 – 1616
Helixi168 – 1769
Turni180 – 1823
Helixi183 – 1853
Beta strandi186 – 1905
Beta strandi193 – 1953
Helixi196 – 20611
Beta strandi210 – 2134
Helixi214 – 2174
Beta strandi229 – 2346
Helixi236 – 2394
Helixi242 – 25413
Beta strandi258 – 2625
Helixi268 – 28114
Helixi292 – 2943
Beta strandi298 – 3014
Helixi313 – 3153
Beta strandi316 – 3183

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1FHUX-ray1.65A1-320[»]
1FHVX-ray1.77A1-320[»]
1R6WX-ray1.62A1-320[»]
2OFJX-ray2.30A/B/C/D1-320[»]
ProteinModelPortaliP29208.
SMRiP29208. Positions 1-320.

Miscellaneous databases

EvolutionaryTraceiP29208.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1441.
HOGENOMiHOG000271247.
KOiK02549.
OMAiYEANRDG.
OrthoDBiEOG6VXFBR.
PhylomeDBiP29208.

Family and domain databases

Gene3Di3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
HAMAPiMF_00470. MenC_1.
InterProiIPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR_MLE.
IPR010196. OSB_synthase.
[Graphical view]
PANTHERiPTHR13794. PTHR13794. 1 hit.
PfamiPF01188. MR_MLE. 1 hit.
[Graphical view]
SMARTiSM00922. MR_MLE. 1 hit.
[Graphical view]
SUPFAMiSSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
TIGRFAMsiTIGR01927. menC_gamma/gm+. 1 hit.

Sequencei

Sequence statusi: Complete.

P29208-1 [UniParc]FASTAAdd to Basket

« Hide

MRSAQVYRWQ IPMDAGVVLR DRRLKTRDGL YVCLREGERE GWGEISPLPG    50
FSQETWEEAQ SVLLAWVNNW LAGDCELPQM PSVAFGVSCA LAELTDTLPQ 100
AANYRAAPLC NGDPDDLILK LADMPGEKVA KVKVGLYEAV RDGMVVNLLL 150
EAIPDLHLRL DANRAWTPLK GQQFAKYVNP DYRDRIAFLE EPCKTRDDSR 200
AFARETGIAI AWDESLREPD FAFVAEEGVR AVVIKPTLTG SLEKVREQVQ 250
AAHALGLTAV ISSSIESSLG LTQLARIAAW LTPDTIPGLD TLDLMQAQQV 300
RRWPGSTLPV VEVDALERLL 320
Length:320
Mass (Da):35,477
Last modified:November 1, 1997 - v2
Checksum:iE20245EC13D06839
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti176 – 1772Missing in AAA71917. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L07256 Unassigned DNA. Translation: AAA71917.1.
U00096 Genomic DNA. Translation: AAC75321.1.
AP009048 Genomic DNA. Translation: BAA16085.2.
PIRiC64997.
RefSeqiNP_416764.1. NC_000913.3.
YP_490501.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC75321; AAC75321; b2261.
BAA16085; BAA16085; BAA16085.
GeneIDi12931509.
946734.
KEGGiecj:Y75_p2225.
eco:b2261.
PATRICi32119889. VBIEscCol129921_2354.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L07256 Unassigned DNA. Translation: AAA71917.1 .
U00096 Genomic DNA. Translation: AAC75321.1 .
AP009048 Genomic DNA. Translation: BAA16085.2 .
PIRi C64997.
RefSeqi NP_416764.1. NC_000913.3.
YP_490501.1. NC_007779.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1FHU X-ray 1.65 A 1-320 [» ]
1FHV X-ray 1.77 A 1-320 [» ]
1R6W X-ray 1.62 A 1-320 [» ]
2OFJ X-ray 2.30 A/B/C/D 1-320 [» ]
ProteinModelPortali P29208.
SMRi P29208. Positions 1-320.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P29208. 5 interactions.
MINTi MINT-1305669.
STRINGi 511145.b2261.

Proteomic databases

PaxDbi P29208.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC75321 ; AAC75321 ; b2261 .
BAA16085 ; BAA16085 ; BAA16085 .
GeneIDi 12931509.
946734.
KEGGi ecj:Y75_p2225.
eco:b2261.
PATRICi 32119889. VBIEscCol129921_2354.

Organism-specific databases

EchoBASEi EB1494.
EcoGenei EG11532. menC.

Phylogenomic databases

eggNOGi COG1441.
HOGENOMi HOG000271247.
KOi K02549.
OMAi YEANRDG.
OrthoDBi EOG6VXFBR.
PhylomeDBi P29208.

Enzyme and pathway databases

UniPathwayi UPA00079 ; UER00165 .
BioCyci EcoCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER.
ECOL316407:JW2256-MONOMER.
MetaCyc:O-SUCCINYLBENZOATE-COA-SYN-MONOMER.
BRENDAi 4.2.1.113. 2026.
SABIO-RK P29208.

Miscellaneous databases

EvolutionaryTracei P29208.
PROi P29208.

Gene expression databases

Genevestigatori P29208.

Family and domain databases

Gene3Di 3.20.20.120. 1 hit.
3.30.390.10. 1 hit.
HAMAPi MF_00470. MenC_1.
InterProi IPR029065. Enolase_C-like.
IPR029017. Enolase_N_like.
IPR013342. Mandelate_racemase_C.
IPR001354. MR_MLE.
IPR010196. OSB_synthase.
[Graphical view ]
PANTHERi PTHR13794. PTHR13794. 1 hit.
Pfami PF01188. MR_MLE. 1 hit.
[Graphical view ]
SMARTi SM00922. MR_MLE. 1 hit.
[Graphical view ]
SUPFAMi SSF51604. SSF51604. 1 hit.
SSF54826. SSF54826. 1 hit.
TIGRFAMsi TIGR01927. menC_gamma/gm+. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Menaquinone (vitamin K2) biosynthesis: cloning, nucleotide sequence, and expression of the menC gene from Escherichia coli."
    Sharma V., Meganathan R., Hudspeth M.E.S.
    J. Bacteriol. 175:4917-4921(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Unexpected divergence of enzyme function and sequence: 'N-acylamino acid racemase' is o-succinylbenzoate synthase."
    Palmer D.R., Garrett J.B., Sharma V., Meganathan R., Babbitt P.C., Gerlt J.A.
    Biochemistry 38:4252-4258(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHARACTERIZATION.
  6. "Evolution of enzymatic activity in the enolase superfamily: structure of o-succinylbenzoate synthase from Escherichia coli in complex with Mg(2+) and o-Succinylbenzoate."
    Thompson T.B., Garrett J.B., Taylor E.A., Meganathan R., Gerlt J.A., Rayment I.
    Biochemistry 39:10662-10676(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS).

Entry informationi

Entry nameiMENC_ECOLI
AccessioniPrimary (citable) accession number: P29208
Secondary accession number(s): P76476, P76931
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: November 1, 1997
Last modified: June 11, 2014
This is version 133 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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