Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to 23S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Alternative name(s):
Hmal13
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:rrnAC0065
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337581 – 14550S ribosomal protein L13Add BLAST145

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Interacts weakly with proteins L3 and L6.UniRule annotation2 Publications

Protein-protein interaction databases

STRINGi272569.rrnAC0065.

Structurei

Secondary structure

1145
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi9 – 13Combined sources5
Helixi19 – 31Combined sources13
Beta strandi36 – 39Combined sources4
Helixi41 – 43Combined sources3
Beta strandi45 – 48Combined sources4
Helixi50 – 62Combined sources13
Helixi75 – 84Combined sources10
Turni85 – 90Combined sources6
Helixi92 – 99Combined sources8
Beta strandi101 – 103Combined sources3
Beta strandi109 – 111Combined sources3
Turni117 – 119Combined sources3
Turni123 – 125Combined sources3
Beta strandi128 – 131Combined sources4
Helixi132 – 139Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40G1-145[»]
1JJ2X-ray2.40I1-145[»]
1K73X-ray3.01K1-145[»]
1K8AX-ray3.00K1-145[»]
1K9MX-ray3.00K1-145[»]
1KC8X-ray3.01K1-145[»]
1KD1X-ray3.00K1-145[»]
1KQSX-ray3.10I1-145[»]
1M1KX-ray3.20K1-145[»]
1M90X-ray2.80K1-145[»]
1N8RX-ray3.00K1-145[»]
1NJIX-ray3.00K1-145[»]
1Q7YX-ray3.20K1-145[»]
1Q81X-ray2.95K1-145[»]
1Q82X-ray2.98K1-145[»]
1Q86X-ray3.00K1-145[»]
1QVFX-ray3.10I1-145[»]
1QVGX-ray2.90I1-145[»]
1S72X-ray2.40J1-145[»]
1VQ4X-ray2.70J1-145[»]
1VQ5X-ray2.60J1-145[»]
1VQ6X-ray2.70J1-145[»]
1VQ7X-ray2.50J1-145[»]
1VQ8X-ray2.20J1-145[»]
1VQ9X-ray2.40J1-145[»]
1VQKX-ray2.30J1-145[»]
1VQLX-ray2.30J1-145[»]
1VQMX-ray2.30J1-145[»]
1VQNX-ray2.40J1-145[»]
1VQOX-ray2.20J1-145[»]
1VQPX-ray2.25J1-145[»]
1W2BX-ray3.50I1-145[»]
1YHQX-ray2.40J1-145[»]
1YI2X-ray2.65J1-145[»]
1YIJX-ray2.60J1-145[»]
1YITX-ray2.80J1-145[»]
1YJ9X-ray2.90J1-145[»]
1YJNX-ray3.00J1-145[»]
1YJWX-ray2.90J1-145[»]
2OTJX-ray2.90J1-145[»]
2OTLX-ray2.70J1-145[»]
2QA4X-ray3.00J1-145[»]
2QEXX-ray2.90J1-145[»]
3CC2X-ray2.40J1-145[»]
3CC4X-ray2.70J1-145[»]
3CC7X-ray2.70J1-145[»]
3CCEX-ray2.75J1-145[»]
3CCJX-ray2.70J1-145[»]
3CCLX-ray2.90J1-145[»]
3CCMX-ray2.55J1-145[»]
3CCQX-ray2.90J1-145[»]
3CCRX-ray3.00J1-145[»]
3CCSX-ray2.95J1-145[»]
3CCUX-ray2.80J1-145[»]
3CCVX-ray2.90J1-145[»]
3CD6X-ray2.75J1-145[»]
3CMAX-ray2.80J1-145[»]
3CMEX-ray2.95J1-145[»]
3CPWX-ray2.70I1-145[»]
3CXCX-ray3.00I1-145[»]
3G4SX-ray3.20J4-145[»]
3G6EX-ray2.70J4-145[»]
3G71X-ray2.85J4-145[»]
3I55X-ray3.11J1-145[»]
3I56X-ray2.90J1-145[»]
3OW2X-ray2.70I4-145[»]
4V4RX-ray5.90N1-145[»]
4V4SX-ray6.76N1-145[»]
4V9FX-ray2.40J1-145[»]
ProteinModelPortaliP29198.
SMRiP29198.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP29198.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L13P family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242. Archaea.
COG0102. LUCA.
HOGENOMiHOG000225287.
KOiK02871.
OMAiTNLGAKY.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiIPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P29198-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVAEFDADV IVDARDCIMG RVASQVAEQA LDGETVAVVN AERAVITGRE
60 70 80 90 100
EQIVEKYEKR VDIGNDNGYF YPKRPDGIFK RTIRGMLPHK KQRGREAFES
110 120 130 140
VRVYLGNPYD EDGEVLDGTS LDRLSNIKFV TLGEISETLG ANKTW
Length:145
Mass (Da):16,228
Last modified:December 1, 1992 - v1
Checksum:i069CE666662AE3BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M76567 Genomic DNA. Translation: AAA73097.1.
AY596297 Genomic DNA. Translation: AAV45145.1.
PIRiB41715.
RefSeqiWP_004593558.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV45145; AAV45145; rrnAC0065.
GeneIDi3130528.
KEGGihma:rrnAC0065.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M76567 Genomic DNA. Translation: AAA73097.1.
AY596297 Genomic DNA. Translation: AAV45145.1.
PIRiB41715.
RefSeqiWP_004593558.1. NC_006396.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FFKX-ray2.40G1-145[»]
1JJ2X-ray2.40I1-145[»]
1K73X-ray3.01K1-145[»]
1K8AX-ray3.00K1-145[»]
1K9MX-ray3.00K1-145[»]
1KC8X-ray3.01K1-145[»]
1KD1X-ray3.00K1-145[»]
1KQSX-ray3.10I1-145[»]
1M1KX-ray3.20K1-145[»]
1M90X-ray2.80K1-145[»]
1N8RX-ray3.00K1-145[»]
1NJIX-ray3.00K1-145[»]
1Q7YX-ray3.20K1-145[»]
1Q81X-ray2.95K1-145[»]
1Q82X-ray2.98K1-145[»]
1Q86X-ray3.00K1-145[»]
1QVFX-ray3.10I1-145[»]
1QVGX-ray2.90I1-145[»]
1S72X-ray2.40J1-145[»]
1VQ4X-ray2.70J1-145[»]
1VQ5X-ray2.60J1-145[»]
1VQ6X-ray2.70J1-145[»]
1VQ7X-ray2.50J1-145[»]
1VQ8X-ray2.20J1-145[»]
1VQ9X-ray2.40J1-145[»]
1VQKX-ray2.30J1-145[»]
1VQLX-ray2.30J1-145[»]
1VQMX-ray2.30J1-145[»]
1VQNX-ray2.40J1-145[»]
1VQOX-ray2.20J1-145[»]
1VQPX-ray2.25J1-145[»]
1W2BX-ray3.50I1-145[»]
1YHQX-ray2.40J1-145[»]
1YI2X-ray2.65J1-145[»]
1YIJX-ray2.60J1-145[»]
1YITX-ray2.80J1-145[»]
1YJ9X-ray2.90J1-145[»]
1YJNX-ray3.00J1-145[»]
1YJWX-ray2.90J1-145[»]
2OTJX-ray2.90J1-145[»]
2OTLX-ray2.70J1-145[»]
2QA4X-ray3.00J1-145[»]
2QEXX-ray2.90J1-145[»]
3CC2X-ray2.40J1-145[»]
3CC4X-ray2.70J1-145[»]
3CC7X-ray2.70J1-145[»]
3CCEX-ray2.75J1-145[»]
3CCJX-ray2.70J1-145[»]
3CCLX-ray2.90J1-145[»]
3CCMX-ray2.55J1-145[»]
3CCQX-ray2.90J1-145[»]
3CCRX-ray3.00J1-145[»]
3CCSX-ray2.95J1-145[»]
3CCUX-ray2.80J1-145[»]
3CCVX-ray2.90J1-145[»]
3CD6X-ray2.75J1-145[»]
3CMAX-ray2.80J1-145[»]
3CMEX-ray2.95J1-145[»]
3CPWX-ray2.70I1-145[»]
3CXCX-ray3.00I1-145[»]
3G4SX-ray3.20J4-145[»]
3G6EX-ray2.70J4-145[»]
3G71X-ray2.85J4-145[»]
3I55X-ray3.11J1-145[»]
3I56X-ray2.90J1-145[»]
3OW2X-ray2.70I4-145[»]
4V4RX-ray5.90N1-145[»]
4V4SX-ray6.76N1-145[»]
4V9FX-ray2.40J1-145[»]
ProteinModelPortaliP29198.
SMRiP29198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC0065.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV45145; AAV45145; rrnAC0065.
GeneIDi3130528.
KEGGihma:rrnAC0065.

Phylogenomic databases

eggNOGiarCOG04242. Archaea.
COG0102. LUCA.
HOGENOMiHOG000225287.
KOiK02871.
OMAiTNLGAKY.

Miscellaneous databases

EvolutionaryTraceiP29198.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiIPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
[Graphical view]
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
PfamiPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL13_HALMA
AccessioniPrimary (citable) accession number: P29198
Secondary accession number(s): Q5V5Q7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: November 2, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.