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Protein

Type II secretion system protein D

Gene

xpsD

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-669-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Type II secretion system protein D
Short name:
T2SS protein D
Alternative name(s):
General secretion pathway protein D
Gene namesi
Name:xpsD
Synonyms:pefD
Ordered Locus Names:XCC0670
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121PROSITE-ProRule annotationAdd
BLAST
Chaini22 – 759738Type II secretion system protein DPRO_0000013106Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi22 – 221N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi22 – 221S-diacylglycerol cysteinePROSITE-ProRule annotation

Keywords - PTMi

Lipoprotein, Palmitate

Interactioni

Subunit structurei

Binds to XpsN.

Protein-protein interaction databases

STRINGi190485.XCC0670.

Family & Domainsi

Sequence similaritiesi

Belongs to the GSP D family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000225524.
KOiK02453.
OMAiDWLKGMS.
OrthoDBiEOG6BGP3S.

Family and domain databases

InterProiIPR001775. GspD/PilQ.
IPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR013356. T2SS_GspD.
IPR004845. T2SS_GspD_CS.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 2 hits.
[Graphical view]
PRINTSiPR00811. BCTERIALGSPD.
TIGRFAMsiTIGR02517. type_II_gspD. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
PS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P29041-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSERMTPRLF PVSLLIGLLA GCATTPPPDV RRDARLDPQV GAAGATQTTA
60 70 80 90 100
EQRADGNASA KPTPVIRRGS GTMINQSAAA APSPTLGMAS SGSATFNFEG
110 120 130 140 150
ESVQAVVKAI LGDMLGQNYV IAPGVQGTVT LATPNPVSPA QALNLLEMVL
160 170 180 190 200
GWNNARMVFS GGRYNIVPAD QALAGTVAPS TASPSAARGF EVRVVPLKYI
210 220 230 240 250
SASEMKKVLE PYARPNAIVG TDASRNVITL GGTRAELENY LRTVQIFDVD
260 270 280 290 300
WLSGMSVGVF PIQSGKAEKI SADLEKVFGE QSKTPSAGMF RFMPLENANA
310 320 330 340 350
VLVITPQPRY LDQIQQWLDR IDSAGGGVRL FSYELKYIKA KDLADRLSEV
360 370 380 390 400
FGGRGNGGNS GPSLVPGGVV NMLGNNSGGA DRDESLGSSS GATGGDIGGT
410 420 430 440 450
SNGSSQSGTS GSFGGSSGSG MLQLPPSTNQ NGSVTLEVEG DKVGVSAVAE
460 470 480 490 500
TNTLLVRTSA QAWKSIRDVI EKLDVMPMQV HIEAQIAEVT LTGRLQYGVN
510 520 530 540 550
WYFENAVTTP SNADGSGGPN LPSAAGRGIW GDVSGSVTSN GVAWTFLGKN
560 570 580 590 600
AAAIISALDQ VTNLRLLQTP SVFVRNNAEA TLNVGSRIPI NSTSINTGLG
610 620 630 640 650
SDSSFSSVQY IDTGVILKVR PRVTKDGMVF LDIVQEVSTP GARPAACTAA
660 670 680 690 700
ATTTVNSAAC NVDINTRRVK TEAAVQNGDT IMLAGLIDDS TTDGSNGIPF
710 720 730 740 750
LSKLPVVGAL FGRKTQNSDR REVIVLITPS IVRNPQDARD LTDEYGSKFK

SMRPMDVHK
Length:759
Mass (Da):79,316
Last modified:December 1, 1992 - v1
Checksum:iA62DCDD53456EA1A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81648 Genomic DNA. Translation: AAA27615.1.
AE008922 Genomic DNA. Translation: AAM39986.1.
PIRiC41843.
RefSeqiNP_636062.1. NC_003902.1.
WP_011035910.1. NC_003902.1.

Genome annotation databases

EnsemblBacteriaiAAM39986; AAM39986; XCC0670.
GeneIDi1001320.
KEGGixcc:XCC0670.
PATRICi24072000. VBIXanCam115730_0735.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81648 Genomic DNA. Translation: AAA27615.1.
AE008922 Genomic DNA. Translation: AAM39986.1.
PIRiC41843.
RefSeqiNP_636062.1. NC_003902.1.
WP_011035910.1. NC_003902.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi190485.XCC0670.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAM39986; AAM39986; XCC0670.
GeneIDi1001320.
KEGGixcc:XCC0670.
PATRICi24072000. VBIXanCam115730_0735.

Phylogenomic databases

eggNOGiENOG4105GVR. Bacteria.
COG1450. LUCA.
HOGENOMiHOG000225524.
KOiK02453.
OMAiDWLKGMS.
OrthoDBiEOG6BGP3S.

Enzyme and pathway databases

BioCyciXCAM190485:GIXZ-669-MONOMER.

Family and domain databases

InterProiIPR001775. GspD/PilQ.
IPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR013356. T2SS_GspD.
IPR004845. T2SS_GspD_CS.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 2 hits.
[Graphical view]
PRINTSiPR00811. BCTERIALGSPD.
TIGRFAMsiTIGR02517. type_II_gspD. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
PS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of a gene required for the secretion of extracellular enzymes across the outer membrane by Xanthomonas campestris pv. campestris."
    Hu N.-T., Hung M.-N., Chiou S.-J., Tang F., Chiang D.-C., Huang H.-Y., Wu C.-Y.
    J. Bacteriol. 174:2679-2687(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Comparison of the genomes of two Xanthomonas pathogens with differing host specificities."
    da Silva A.C.R., Ferro J.A., Reinach F.C., Farah C.S., Furlan L.R., Quaggio R.B., Monteiro-Vitorello C.B., Van Sluys M.A., Almeida N.F. Jr., Alves L.M.C., do Amaral A.M., Bertolini M.C., Camargo L.E.A., Camarotte G., Cannavan F., Cardozo J., Chambergo F., Ciapina L.P.
    , Cicarelli R.M.B., Coutinho L.L., Cursino-Santos J.R., El-Dorry H., Faria J.B., Ferreira A.J.S., Ferreira R.C.C., Ferro M.I.T., Formighieri E.F., Franco M.C., Greggio C.C., Gruber A., Katsuyama A.M., Kishi L.T., Leite R.P., Lemos E.G.M., Lemos M.V.F., Locali E.C., Machado M.A., Madeira A.M.B.N., Martinez-Rossi N.M., Martins E.C., Meidanis J., Menck C.F.M., Miyaki C.Y., Moon D.H., Moreira L.M., Novo M.T.M., Okura V.K., Oliveira M.C., Oliveira V.R., Pereira H.A., Rossi A., Sena J.A.D., Silva C., de Souza R.F., Spinola L.A.F., Takita M.A., Tamura R.E., Teixeira E.C., Tezza R.I.D., Trindade dos Santos M., Truffi D., Tsai S.M., White F.F., Setubal J.C., Kitajima J.P.
    Nature 417:459-463(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25.
  3. "Association of the cytoplasmic membrane protein XpsN with the outer membrane protein XpsD in the type II protein secretion apparatus of Xanthomonas campestris pv. campestris."
    Lee H.-M., Wang K.-C., Liu Y.-L., Yew H.-Y., Chen L.-Y., Leu W.-M., Chen D.C., Hu N.-T.
    J. Bacteriol. 182:1549-1557(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH XPSN.

Entry informationi

Entry nameiGSPD_XANCP
AccessioniPrimary (citable) accession number: P29041
Secondary accession number(s): P31763
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: May 11, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.