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Protein

Type II secretion system protein D

Gene

xpsD

Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

BioCyciXCAM190485:G1FZM-669-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Type II secretion system protein D
Short name:
T2SS protein D
Alternative name(s):
General secretion pathway protein D
Gene namesi
Name:xpsD
Synonyms:pefD
Ordered Locus Names:XCC0670
OrganismiXanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Taxonomic identifieri190485 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000001010 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21PROSITE-ProRule annotationAdd BLAST21
ChainiPRO_000001310622 – 759Type II secretion system protein DAdd BLAST738

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi22N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi22S-diacylglycerol cysteinePROSITE-ProRule annotation1

Keywords - PTMi

Lipoprotein, Palmitate

Interactioni

Subunit structurei

Binds to XpsN.

Protein-protein interaction databases

STRINGi190485.XCC0670

Structurei

3D structure databases

SMRiP29041
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GSP D family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105GVR Bacteria
COG1450 LUCA
HOGENOMiHOG000225524
KOiK02453
OMAiDWLKGMS

Family and domain databases

Gene3Di3.30.1370.120, 1 hit
InterProiView protein in InterPro
IPR001775 GspD/PilQ
IPR005644 NolW-like
IPR038591 NolW-like_sf
IPR004846 T2SS/T3SS
IPR013356 T2SS_GspD
IPR004845 T2SS_GspD_CS
PfamiView protein in Pfam
PF00263 Secretin, 1 hit
PF03958 Secretin_N, 2 hits
PRINTSiPR00811 BCTERIALGSPD
TIGRFAMsiTIGR02517 type_II_gspD, 1 hit
PROSITEiView protein in PROSITE
PS51257 PROKAR_LIPOPROTEIN, 1 hit
PS00875 T2SP_D, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P29041-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSERMTPRLF PVSLLIGLLA GCATTPPPDV RRDARLDPQV GAAGATQTTA
60 70 80 90 100
EQRADGNASA KPTPVIRRGS GTMINQSAAA APSPTLGMAS SGSATFNFEG
110 120 130 140 150
ESVQAVVKAI LGDMLGQNYV IAPGVQGTVT LATPNPVSPA QALNLLEMVL
160 170 180 190 200
GWNNARMVFS GGRYNIVPAD QALAGTVAPS TASPSAARGF EVRVVPLKYI
210 220 230 240 250
SASEMKKVLE PYARPNAIVG TDASRNVITL GGTRAELENY LRTVQIFDVD
260 270 280 290 300
WLSGMSVGVF PIQSGKAEKI SADLEKVFGE QSKTPSAGMF RFMPLENANA
310 320 330 340 350
VLVITPQPRY LDQIQQWLDR IDSAGGGVRL FSYELKYIKA KDLADRLSEV
360 370 380 390 400
FGGRGNGGNS GPSLVPGGVV NMLGNNSGGA DRDESLGSSS GATGGDIGGT
410 420 430 440 450
SNGSSQSGTS GSFGGSSGSG MLQLPPSTNQ NGSVTLEVEG DKVGVSAVAE
460 470 480 490 500
TNTLLVRTSA QAWKSIRDVI EKLDVMPMQV HIEAQIAEVT LTGRLQYGVN
510 520 530 540 550
WYFENAVTTP SNADGSGGPN LPSAAGRGIW GDVSGSVTSN GVAWTFLGKN
560 570 580 590 600
AAAIISALDQ VTNLRLLQTP SVFVRNNAEA TLNVGSRIPI NSTSINTGLG
610 620 630 640 650
SDSSFSSVQY IDTGVILKVR PRVTKDGMVF LDIVQEVSTP GARPAACTAA
660 670 680 690 700
ATTTVNSAAC NVDINTRRVK TEAAVQNGDT IMLAGLIDDS TTDGSNGIPF
710 720 730 740 750
LSKLPVVGAL FGRKTQNSDR REVIVLITPS IVRNPQDARD LTDEYGSKFK

SMRPMDVHK
Length:759
Mass (Da):79,316
Last modified:December 1, 1992 - v1
Checksum:iA62DCDD53456EA1A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81648 Genomic DNA Translation: AAA27615.1
AE008922 Genomic DNA Translation: AAM39986.1
PIRiC41843
RefSeqiNP_636062.1, NC_003902.1
WP_011035910.1, NC_003902.1

Genome annotation databases

EnsemblBacteriaiAAM39986; AAM39986; XCC0670
GeneIDi1001320
KEGGixcc:XCC0670
PATRICifig|190485.4.peg.735

Similar proteinsi

Entry informationi

Entry nameiGSPD_XANCP
AccessioniPrimary (citable) accession number: P29041
Secondary accession number(s): P31763
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: March 28, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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