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Protein

Uncharacterized protein YcgB

Gene

ycgB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11516-MONOMER.
ECOL316407:JW1177-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcgB
Gene namesi
Name:ycgB
Ordered Locus Names:b1188, JW1177
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11516. ycgB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688511 – 510Uncharacterized protein YcgBAdd BLAST510

Proteomic databases

PaxDbiP29013.
PRIDEiP29013.

Interactioni

Protein-protein interaction databases

BioGridi4260103. 9 interactors.
DIPiDIP-11550N.
IntActiP29013. 4 interactors.
STRINGi511145.b1188.

Structurei

3D structure databases

ProteinModelPortaliP29013.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To B.subtilis SpoVR.Curated

Phylogenomic databases

eggNOGiENOG4105ED1. Bacteria.
COG2719. LUCA.
HOGENOMiHOG000260104.
InParanoidiP29013.
OMAiFNDLWRT.
PhylomeDBiP29013.

Family and domain databases

InterProiIPR007390. Spore_V_R.
[Graphical view]
PfamiPF04293. SpoVR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P29013-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATIDSMNKD TTRLSDGPDW TFDLLDVYLA EIDRVAKLYR LDTYPHQIEV
60 70 80 90 100
ITSEQMMDAY SSVGMPINYP HWSFGKKFIE TERLYKHGQQ GLAYEIVINS
110 120 130 140 150
NPCIAYLMEE NTITMQALVM AHACYGHNSF FKNNYLFRSW TDASSIVDYL
160 170 180 190 200
IFARKYITEC EERYGVDEVE RLLDSCHALM NYGVDRYKRP QKISLQEEKA
210 220 230 240 250
RQKSREEYLQ SQVNMLWRTL PKREEEKTVA EARRYPSEPQ ENLLYFMEKN
260 270 280 290 300
APLLESWQRE ILRIVRKVSQ YFYPQKQTQV MNEGWATFWH YTILNHLYDE
310 320 330 340 350
GKVTERFMLE FLHSHTNVVF QPPYNSPWYS GINPYALGFA MFQDIKRICQ
360 370 380 390 400
SPTEEDKYWF PDIAGSDWLE TLHFAMRDFK DESFISQFLS PKVMRDFRFF
410 420 430 440 450
TVLDDDRHNY LEISAIHNEE GYREIRNRLS SQYNLSNLEP NIQIWNVDLR
460 470 480 490 500
GDRSLTLRYI PHNRAPLDRG RKEVLKHVHR LWGFDVMLEQ QNEDGSIELL
510
ERCPPRMGNL
Length:510
Mass (Da):60,814
Last modified:November 1, 1997 - v2
Checksum:iF7DA86DFC7C75D59
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74272.1.
AP009048 Genomic DNA. Translation: BAA36043.1.
L02948 Unassigned DNA. Translation: AAC36879.1.
PIRiA64865.
RefSeqiNP_415706.1. NC_000913.3.
WP_000190854.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74272; AAC74272; b1188.
BAA36043; BAA36043; BAA36043.
GeneIDi946365.
KEGGiecj:JW1177.
eco:b1188.
PATRICi32117622. VBIEscCol129921_1233.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74272.1.
AP009048 Genomic DNA. Translation: BAA36043.1.
L02948 Unassigned DNA. Translation: AAC36879.1.
PIRiA64865.
RefSeqiNP_415706.1. NC_000913.3.
WP_000190854.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP29013.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260103. 9 interactors.
DIPiDIP-11550N.
IntActiP29013. 4 interactors.
STRINGi511145.b1188.

Proteomic databases

PaxDbiP29013.
PRIDEiP29013.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74272; AAC74272; b1188.
BAA36043; BAA36043; BAA36043.
GeneIDi946365.
KEGGiecj:JW1177.
eco:b1188.
PATRICi32117622. VBIEscCol129921_1233.

Organism-specific databases

EchoBASEiEB1478.
EcoGeneiEG11516. ycgB.

Phylogenomic databases

eggNOGiENOG4105ED1. Bacteria.
COG2719. LUCA.
HOGENOMiHOG000260104.
InParanoidiP29013.
OMAiFNDLWRT.
PhylomeDBiP29013.

Enzyme and pathway databases

BioCyciEcoCyc:EG11516-MONOMER.
ECOL316407:JW1177-MONOMER.

Miscellaneous databases

PROiP29013.

Family and domain databases

InterProiIPR007390. Spore_V_R.
[Graphical view]
PfamiPF04293. SpoVR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCGB_ECOLI
AccessioniPrimary (citable) accession number: P29013
Secondary accession number(s): P76006
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.