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Protein

H repeat-associated protein YbfD

Gene

ybfD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:EG11524-MONOMER.
ECOL316407:JW0696-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
H repeat-associated protein YbfD
Alternative name(s):
ORF-H3
Gene namesi
Name:ybfD
Ordered Locus Names:b0706, JW0696
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11524. ybfD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686871 – 253H repeat-associated protein YbfDAdd BLAST253

Proteomic databases

PaxDbiP28916.
PRIDEiP28916.

Interactioni

Protein-protein interaction databases

BioGridi4261600. 155 interactors.
IntActiP28916. 5 interactors.
STRINGi511145.b0706.

Structurei

3D structure databases

ProteinModelPortaliP28916.
SMRiP28916.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 11 family.Curated

Phylogenomic databases

eggNOGiENOG410600T. Bacteria.
COG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP28916.
OMAiWTRELTI.
PhylomeDBiP28916.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P28916-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELKKLMEHI SIIPDYRQAW KVEHKLSDIL LLTICAVISG AEGWEDIEDF
60 70 80 90 100
GETHPDFLKQ YGDFENGIPV HDTIARVVSC ICPAKFHESF INWMLDYHSS
110 120 130 140 150
DDKDVIAIDG KIHRHSYDKS RRKGAIHVIS AFSTMHSLVI GQIKTDKKSN
160 170 180 190 200
EITAIPELLN MLDIKGKIIK TDAMGCQKDI AEKIQKQGGD YLFAVKGNQG
210 220 230 240 250
RLNKAFEEKF PLKELNNPKH DSYAISEKSH GREETRLHIV CDVPDELIDF

TFE
Length:253
Mass (Da):28,865
Last modified:December 1, 1992 - v1
Checksum:i72E18F07092FB5F0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02373 Genomic DNA. Translation: AAC63076.1.
U00096 Genomic DNA. Translation: AAC73800.1.
AP009048 Genomic DNA. Translation: BAA35365.1.
U15125 Genomic DNA. Translation: AAA66213.1.
PIRiA64806.
RefSeqiNP_415234.1. NC_000913.3.
WP_000420862.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73800; AAC73800; b0706.
BAA35365; BAA35365; BAA35365.
GeneIDi945176.
KEGGiecj:JW0696.
eco:b0706.
PATRICi32116607. VBIEscCol129921_0736.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02373 Genomic DNA. Translation: AAC63076.1.
U00096 Genomic DNA. Translation: AAC73800.1.
AP009048 Genomic DNA. Translation: BAA35365.1.
U15125 Genomic DNA. Translation: AAA66213.1.
PIRiA64806.
RefSeqiNP_415234.1. NC_000913.3.
WP_000420862.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP28916.
SMRiP28916.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261600. 155 interactors.
IntActiP28916. 5 interactors.
STRINGi511145.b0706.

Proteomic databases

PaxDbiP28916.
PRIDEiP28916.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73800; AAC73800; b0706.
BAA35365; BAA35365; BAA35365.
GeneIDi945176.
KEGGiecj:JW0696.
eco:b0706.
PATRICi32116607. VBIEscCol129921_0736.

Organism-specific databases

EchoBASEiEB1486.
EcoGeneiEG11524. ybfD.

Phylogenomic databases

eggNOGiENOG410600T. Bacteria.
COG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP28916.
OMAiWTRELTI.
PhylomeDBiP28916.

Enzyme and pathway databases

BioCyciEcoCyc:EG11524-MONOMER.
ECOL316407:JW0696-MONOMER.

Miscellaneous databases

PROiP28916.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBFD_ECOLI
AccessioniPrimary (citable) accession number: P28916
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.