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Protein

Ribonucleoside-diphosphate reductase large subunit

Gene

RIR1

Organism
Equine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Ribonucleoside-diphosphate reductase holoenzyme provides the precursors necessary for viral DNA synthesis. Allows virus growth in non-dividing cells, as well as reactivation from latency in infected hosts. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.UniRule annotation

Catalytic activityi

2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin.UniRule annotation

Pathwayi: DNA replication

This protein is involved in the pathway DNA replication, which is part of Genetic information processing.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway DNA replication and in Genetic information processing.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei208 – 2081SubstrateUniRule annotation
Sitei224 – 2241Important for hydrogen atom transferUniRule annotation
Binding sitei254 – 2541Substrate; via amide nitrogenUniRule annotation
Active sitei436 – 4361Proton acceptorUniRule annotation
Active sitei438 – 4381Cysteine radical intermediateUniRule annotation
Active sitei440 – 4401Proton acceptorUniRule annotation
Sitei453 – 4531Important for hydrogen atom transferUniRule annotation
Sitei765 – 7651Important for electron transferUniRule annotation
Sitei766 – 7661Important for electron transferUniRule annotation
Sitei785 – 7851Interacts with thioredoxin/glutaredoxinUniRule annotation
Sitei788 – 7881Interacts with thioredoxin/glutaredoxinUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

DNA replication

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

UniPathwayiUPA00326.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonucleoside-diphosphate reductase large subunitUniRule annotation (EC:1.17.4.1UniRule annotation)
Short name:
R1UniRule annotation
Alternative name(s):
Ribonucleotide reductase large subunitUniRule annotation
Gene namesi
Name:RIR1UniRule annotation
Ordered Locus Names:21
OrganismiEquine herpesvirus 1 (strain Ab4p) (EHV-1) (Equine abortion virus)
Taxonomic identifieri31520 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageHerpesviralesHerpesviridaeAlphaherpesvirinaeVaricellovirus
Virus hostiEquus caballus (Horse) [TaxID: 9796]
Proteomesi
  • UP000001189 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 790790Ribonucleoside-diphosphate reductase large subunitPRO_0000187241Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi224 ↔ 453Redox-activeUniRule annotation

Keywords - PTMi

Disulfide bond

Proteomic databases

PRIDEiP28846.

Expressioni

Keywords - Developmental stagei

Early protein

Interactioni

Subunit structurei

Heterotetramer composed of a homodimer of the large subunit (R1) and a homodimer of the small subunit (R2). Larger multisubunit protein complex are also active, composed of (R1)n(R2)n.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP28846.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni223 – 2242Substrate bindingUniRule annotation
Regioni436 – 4405Substrate bindingUniRule annotation
Regioni621 – 6255Substrate bindingUniRule annotation

Sequence similaritiesi

Belongs to the ribonucleoside diphosphate reductase large chain family.UniRule annotation

Family and domain databases

HAMAPiMF_04026. HSV_RIR1. 1 hit.
InterProiIPR013346. NrdE_NrdA.
IPR000788. RNR_lg_C.
IPR013509. RNR_lsu_N.
[Graphical view]
PfamiPF02867. Ribonuc_red_lgC. 1 hit.
PF00317. Ribonuc_red_lgN. 1 hit.
[Graphical view]
PRINTSiPR01183. RIBORDTASEM1.
TIGRFAMsiTIGR02506. NrdE_NrdA. 1 hit.
PROSITEiPS00089. RIBORED_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P28846-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALNFLQSDC PLAIIQDVIS RVDAISDYGY ANELSTTLPP RPSRSQVLEY
60 70 80 90 100
ITRVVDTLKP RCRVDERLYV VCGELVHLRI RTRNVEDLKY WLNSTEIALN
110 120 130 140 150
EIVEKDILDH LDFIQRTLHA FESSEYRELC ALGLQSALKY EEMYLAKMRG
160 170 180 190 200
GRIESMGQFF LRLATTATHY TMEEPAMARV LVSGEVGWTY IFKAYFTALA
210 220 230 240 250
GQVLIPATPI MLFGGRDCGS LASCYLLNPR VTDMNSAMLA LMEEAGPILC
260 270 280 290 300
NRGGIGLSLQ RFNTPPKEGC SRGVMALLKL IDSMTMAINS DGERPTGVCV
310 320 330 340 350
YFEPWHADIR AILNMRGMLA RDETVRCDNI FACMWTPDLF FDRYQRYLDG
360 370 380 390 400
ESGVMWTLFD DTASHLCHMY GKEFEEEYER LEQCGFGVDS IPIQDMAFII
410 420 430 440 450
VRSAVMTGSP FLMFKDACNK HYHFDLRRKG AIMGSNLCTE IIQHADETQN
460 470 480 490 500
GVCNLASINL PKCLAIPPPH TAGVPYFDFA ALGRAAATAT IFVNSMMRAG
510 520 530 540 550
TYPTVKSQRG VDENRSLGLG IQGLHTAFLM LDLDMASPEA RQLNKQIAER
560 570 580 590 600
LLLNSMKASA TLCRLGMKPF KGFEDSKYSL GELPFDSYPG VTLANRNAWR
610 620 630 640 650
RLRTEIKQHG LYNSQFVAYM PTVSSSQVTE SSEGFSPVYT NLFSKVTATG
660 670 680 690 700
EVLRPNLLLM RTIRSIFPRE CARLQALSTL EMAQWSVVGA FGDLPVGHPL
710 720 730 740 750
SKFKTAFEYD QRTLIDMCAD RAPFVDQSQS MSLFITEPAD GKLPASKIMS
760 770 780 790
LLVHAYKRGL KTGMYYCKIK KATNNGVFVG GDLVCTSCSL
Length:790
Mass (Da):88,399
Last modified:December 1, 1992 - v1
Checksum:iD8A21677716F5844
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY665713 Genomic DNA. Translation: AAT67278.1.
PIRiD36797. WMBEA2.
RefSeqiYP_053066.1. NC_001491.2.

Genome annotation databases

GeneIDi1487540.
KEGGivg:1487540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY665713 Genomic DNA. Translation: AAT67278.1.
PIRiD36797. WMBEA2.
RefSeqiYP_053066.1. NC_001491.2.

3D structure databases

ProteinModelPortaliP28846.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP28846.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1487540.
KEGGivg:1487540.

Enzyme and pathway databases

UniPathwayiUPA00326.

Family and domain databases

HAMAPiMF_04026. HSV_RIR1. 1 hit.
InterProiIPR013346. NrdE_NrdA.
IPR000788. RNR_lg_C.
IPR013509. RNR_lsu_N.
[Graphical view]
PfamiPF02867. Ribonuc_red_lgC. 1 hit.
PF00317. Ribonuc_red_lgN. 1 hit.
[Graphical view]
PRINTSiPR01183. RIBORDTASEM1.
TIGRFAMsiTIGR02506. NrdE_NrdA. 1 hit.
PROSITEiPS00089. RIBORED_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRIR1_EHV1B
AccessioniPrimary (citable) accession number: P28846
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: June 8, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.