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Protein

Superoxide dismutase [Cu-Zn] 2

Gene

SODCC2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Protein has several cofactor binding sites:
  • Cu cationBy similarityNote: Binds 1 copper ion per subunit.By similarity
  • Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi45Copper; catalyticBy similarity1
Metal bindingi47Copper; catalyticBy similarity1
Metal bindingi62Copper; catalyticBy similarity1
Metal bindingi62Zinc; structuralBy similarity1
Metal bindingi70Zinc; structuralBy similarity1
Metal bindingi79Zinc; structuralBy similarity1
Metal bindingi82Zinc; structuralBy similarity1
Metal bindingi119Copper; catalyticBy similarity1

GO - Molecular functioni

Keywordsi

Molecular functionAntioxidant, Oxidoreductase
LigandCopper, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn] 2 (EC:1.15.1.1)
Gene namesi
Name:SODCC2
Synonyms:SODCC.2
Ordered Locus Names:Os07g0665200, LOC_Os07g46990
ORF Names:OJ1343_D04.132, P0450A04.103
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 7

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001641492 – 152Superoxide dismutase [Cu-Zn] 2Add BLAST151

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi56 ↔ 145By similarity

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP28757.
PRIDEiP28757.

Expressioni

Gene expression databases

GenevisibleiP28757. OS.

Interactioni

Subunit structurei

Homodimer.

Protein-protein interaction databases

STRINGi39947.LOC_Os07g46990.1.

Structurei

3D structure databases

ProteinModelPortaliP28757.
SMRiP28757.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.Curated

Phylogenomic databases

eggNOGiKOG0441. Eukaryota.
COG2032. LUCA.
HOGENOMiHOG000263447.
InParanoidiP28757.
KOiK04565.
OMAiGKSVIIH.
OrthoDBiEOG09360P4O.

Family and domain databases

CDDicd00305. Cu-Zn_Superoxide_Dismutase. 1 hit.
Gene3Di2.60.40.200. 1 hit.
InterProiView protein in InterPro
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
PfamiView protein in Pfam
PF00080. Sod_Cu. 1 hit.
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiView protein in PROSITE
PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P28757-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKAVAVLAS SEGVKGTIFF SQEGDGPTSV TGSVSGLKPG LHGFHVHALG
60 70 80 90 100
DTTNGCMSTG PHFNPTGKEH GAPQDENRHA GDLGNITAGA DGVANVNVSD
110 120 130 140 150
SQIPLTGAHS IIGRAVVVHA DPDDLGKGGH ELSKTTGNAG GRVACGIIGL

QG
Length:152
Mass (Da):15,081
Last modified:January 23, 2007 - v2
Checksum:i8D237FCABFE6EDBE
GO

Sequence cautioni

The sequence BAC10110 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAD30565 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence BAT03098 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D01000 mRNA. Translation: BAA00800.1.
L19434 Genomic DNA. Translation: AAC14465.1.
EU325984 mRNA. Translation: ABY52933.1.
AP003825 Genomic DNA. Translation: BAC10110.1. Sequence problems.
AP004274 Genomic DNA. Translation: BAD30565.1. Sequence problems.
AP008213 Genomic DNA. Translation: BAF22478.1.
AP014963 Genomic DNA. Translation: BAT03098.1. Different initiation.
AK243377 mRNA. Translation: BAH01571.1.
PIRiS21136.
RefSeqiXP_015647771.1. XM_015792285.1.
UniGeneiOs.4169.

Genome annotation databases

EnsemblPlantsiOS07T0665200-01; OS07T0665200-01; OS07G0665200.
GeneIDi4344210.
GrameneiOS07T0665200-01; OS07T0665200-01; OS07G0665200.
KEGGiosa:4344210.

Similar proteinsi

Entry informationi

Entry nameiSODC2_ORYSJ
AccessioniPrimary (citable) accession number: P28757
Secondary accession number(s): A0A0N7KP08, Q0D3U5, Q8LIB7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: January 23, 2007
Last modified: August 30, 2017
This is version 129 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families