Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

P28757

- SODC2_ORYSJ

UniProt

P28757 - SODC2_ORYSJ

Protein

Superoxide dismutase [Cu-Zn] 2

Gene

SODCC2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.

    Cofactori

    Binds 1 copper ion per subunit.By similarity
    Binds 1 zinc ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi45 – 451Copper; catalyticBy similarity
    Metal bindingi47 – 471Copper; catalyticBy similarity
    Metal bindingi62 – 621Copper; catalyticBy similarity
    Metal bindingi62 – 621Zinc; structuralBy similarity
    Metal bindingi70 – 701Zinc; structuralBy similarity
    Metal bindingi79 – 791Zinc; structuralBy similarity
    Metal bindingi82 – 821Zinc; structuralBy similarity
    Metal bindingi119 – 1191Copper; catalyticBy similarity

    GO - Molecular functioni

    1. copper ion binding Source: RefGenome
    2. superoxide dismutase activity Source: RefGenome
    3. zinc ion binding Source: RefGenome

    GO - Biological processi

    1. cellular response to copper ion Source: EnsemblPlants/Gramene
    2. cellular response to light intensity Source: EnsemblPlants/Gramene
    3. cellular response to ozone Source: EnsemblPlants/Gramene
    4. cellular response to salt stress Source: EnsemblPlants/Gramene
    5. cellular response to sucrose stimulus Source: EnsemblPlants/Gramene
    6. cellular response to UV-B Source: EnsemblPlants/Gramene
    7. defense response to bacterium Source: EnsemblPlants/Gramene
    8. gene silencing by miRNA Source: EnsemblPlants/Gramene
    9. removal of superoxide radicals Source: RefGenome
    10. response to iron ion Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Antioxidant, Oxidoreductase

    Keywords - Ligandi

    Copper, Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_175687. Detoxification of Reactive Oxygen Species.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn] 2 (EC:1.15.1.1)
    Gene namesi
    Name:SODCC2
    Synonyms:SODCC.2
    Ordered Locus Names:Os07g0665200, LOC_Os07g46990
    ORF Names:OJ1343_D04.132, P0450A04.103
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 7

    Organism-specific databases

    GrameneiP28757.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: RefGenome

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11Removed1 Publication
    Chaini2 – 152151Superoxide dismutase [Cu-Zn] 2PRO_0000164149Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Disulfide bondi56 ↔ 145By similarity

    Keywords - PTMi

    Disulfide bond

    Proteomic databases

    PaxDbiP28757.
    PRIDEiP28757.

    Interactioni

    Subunit structurei

    Homodimer.

    Structurei

    3D structure databases

    ProteinModelPortaliP28757.
    SMRiP28757. Positions 1-152.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.Curated

    Phylogenomic databases

    eggNOGiCOG2032.
    HOGENOMiHOG000263447.
    KOiK04565.
    OMAiEIEVKLH.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    PRINTSiPR00068. CUZNDISMTASE.
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P28757-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVKAVAVLAS SEGVKGTIFF SQEGDGPTSV TGSVSGLKPG LHGFHVHALG    50
    DTTNGCMSTG PHFNPTGKEH GAPQDENRHA GDLGNITAGA DGVANVNVSD 100
    SQIPLTGAHS IIGRAVVVHA DPDDLGKGGH ELSKTTGNAG GRVACGIIGL 150
    QG 152
    Length:152
    Mass (Da):15,081
    Last modified:January 23, 2007 - v2
    Checksum:i8D237FCABFE6EDBE
    GO

    Sequence cautioni

    The sequence BAC10110.1 differs from that shown. Reason: Erroneous gene model prediction.
    The sequence BAD30565.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D01000 mRNA. Translation: BAA00800.1.
    L19434 Genomic DNA. Translation: AAC14465.1.
    AP003825 Genomic DNA. Translation: BAC10110.1. Sequence problems.
    AP004274 Genomic DNA. Translation: BAD30565.1. Sequence problems.
    PIRiS21136.
    RefSeqiNP_001060564.1. NM_001067099.2.
    UniGeneiOs.4169.

    Genome annotation databases

    GeneIDi4344210.
    KEGGiosa:4344210.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D01000 mRNA. Translation: BAA00800.1 .
    L19434 Genomic DNA. Translation: AAC14465.1 .
    AP003825 Genomic DNA. Translation: BAC10110.1 . Sequence problems.
    AP004274 Genomic DNA. Translation: BAD30565.1 . Sequence problems.
    PIRi S21136.
    RefSeqi NP_001060564.1. NM_001067099.2.
    UniGenei Os.4169.

    3D structure databases

    ProteinModelPortali P28757.
    SMRi P28757. Positions 1-152.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi P28757.
    PRIDEi P28757.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4344210.
    KEGGi osa:4344210.

    Organism-specific databases

    Gramenei P28757.

    Phylogenomic databases

    eggNOGi COG2032.
    HOGENOMi HOG000263447.
    KOi K04565.
    OMAi EIEVKLH.

    Enzyme and pathway databases

    Reactomei REACT_175687. Detoxification of Reactive Oxygen Species.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    PRINTSi PR00068. CUZNDISMTASE.
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
    PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Nucleotide sequences of two cDNA clones encoding different Cu/Zn-superoxide dismutases expressed in developing rice seed (Oryza sativa L.)."
      Sakamoto A., Ohsuga H., Tanaka K.
      Plant Mol. Biol. 19:323-327(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Nipponbare.
      Tissue: Seed.
    2. "Genomic structure of the gene for copper/zinc-superoxide dismutase in rice."
      Sakamoto A., Okumura T., Ohsuga H., Tanaka K.
      FEBS Lett. 301:185-189(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003."
      Komatsu S., Kojima K., Suzuki K., Ozaki K., Higo K.
      Nucleic Acids Res. 32:D388-D392(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE OF 2-11.
      Strain: cv. Nipponbare.
      Tissue: Panicle and Root.

    Entry informationi

    Entry nameiSODC2_ORYSJ
    AccessioniPrimary (citable) accession number: P28757
    Secondary accession number(s): Q8LIB7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 1992
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 107 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3