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P28711 (VP2_FCVF9) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid protein
Gene names
ORF Names:ORF3
OrganismFeline calicivirus (strain F9) (FCV) [Complete proteome]
Taxonomic identifier11981 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeVesivirus
Virus hostFelidae (cat family) [TaxID: 9681]

Protein attributes

Sequence length106 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal terminaition-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.

Sequence similarities

Belongs to the vesivirus VP2 protein family.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 106106Protein VP2
PRO_0000100124

Sequences

Sequence LengthMass (Da)Tools
P28711 [UniParc].

Last modified December 1, 1992. Version 1.
Checksum: 6CC14546564D75E5

FASTA10612,095
        10         20         30         40         50         60 
MNSILGLIDT VTNTIGKAQQ IELDKAALGQ QRELALQRIG LDRQALNNQV EQFNKILEQR 

        70         80         90        100 
VQGPIQSVRL ARAAGFRVDP YSYTNQNFYD DQLNAIRLSY KNLFKI 

« Hide

References

[1]"The complete nucleotide sequence of a feline calicivirus."
Carter M.J., Milton I.D., Meanger J., Bennett M., Gaskell R.M., Turner P.C.
Virology 190:443-448(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[2]"Cloning and sequence determination of the feline calicivirus strain F9."
Meanger J., Carter M.J., Gaskell R.M., Turner P.C.
Biochem. Soc. Trans. 20:26S-26S(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[3]"Identification and sequence determination of the capsid protein gene of feline calicivirus."
Carter M.J., Milton I.D., Turner P.C., Meanger J., Bennett M., Gaskell R.M.
Arch. Virol. 122:223-235(1992) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].
[4]"The mechanism of an exceptional case of reinitiation after translation of a long ORF reveals why such events do not generally occur in mammalian mRNA translation."
Poyry T.A., Kaminski A., Connell E.J., Fraser C.S., Jackson R.J.
Genes Dev. 21:3149-3162(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: EXPRESSION.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
M86379 Genomic RNA. No translation available.
Z11536 Genomic RNA. Translation: CAA77638.1.
PIRC43382.

3D structure databases

ProteinModelPortalP28711.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR007996. Vesivirus_VP2.
[Graphical view]
PfamPF05332. DUF743. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameVP2_FCVF9
AccessionPrimary (citable) accession number: P28711
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: November 13, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families