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P28634 (YAEB_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0066 protein yaeB
Gene names
Name:yaeB
Ordered Locus Names:b0195, JW0191
OrganismEscherichia coli (strain K12)
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length235 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the UPF0066 (virR) family.

Sequence caution

The sequence AAA24509.1 differs from that shown. Reason: Frameshift at several positions.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Binary interactions

With

Entry

#Exp.

IntAct

Notes

defP0A6K31EBI-1114692,EBI-548913

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 235235UPF0066 protein yaeB
PRO_0000155617

Sequences

Sequence LengthMass (Da)Tools
P28634 [UniParc].

Last modified October 1, 1994. Version 2.
Checksum: B19F8D50DECCB572

FASTA23526,362
        10         20         30         40         50         60 
MSSFQFEQIG VIRSPYKEKF AVPRQPGLVK SANGELHLIA PYNQADAVRG LEAFSHLWIL 

        70         80         90        100        110        120 
FVFHQTMEGG WRPTVRPPRL GGNARMGVFA TRSTFRPNPI GMSLVELKEV VCHKDSVILK 

       130        140        150        160        170        180 
LGSLDLVDGT PVVDIKPYLP FAESLPDASA SYAQSAPAAE MAVSFTAEVE KQLLTLEKRY 

       190        200        210        220        230 
PQLTLFIREV LAQDPRPAYR KGEETGKTYA VWLHDFNVRW RVTDAGFEVF ALEPR 

« Hide

References

« Hide 'large scale' references
[1]Miyamoto K.
Submitted (APR-1993) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[2]"Identification, cloning, and characterization of rcsF, a new regulator gene for exopolysaccharide synthesis that suppresses the division mutation ftsZ84 in Escherichia coli K-12."
Gervais F.G., Drapeau G.R.
J. Bacteriol. 174:8016-8022(1992) [PubMed: 1459951] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Strain: K12.
[3]"Systematic sequencing of the Escherichia coli genome: analysis of the 4.0 - 6.0 min (189,987 - 281,416bp) region."
Takemoto K., Mori H., Murayama N., Kataoka K., Yano M., Itoh T., Yamamoto Y., Inokuchi H., Miki T., Hatada E., Fukuda R., Ichihara S., Mizuno T., Makino K., Nakata A., Yura T., Sampei G., Mizobuchi K.
Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]"Sequence of minutes 4-25 of Escherichia coli."
Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[5]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[6]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
D15061 Genomic DNA. Translation: BAA03655.1.
L04474 Genomic DNA. Translation: AAA24509.1. Frameshift.
U70214 Genomic DNA. Translation: AAB08623.1.
U00096 Genomic DNA. Translation: AAC73306.1.
AP009048 Genomic DNA. Translation: BAA77871.1.
PIRC47040.
C64744.
RefSeqNP_414737.1. NC_000913.2.

3D structure databases

ProteinModelPortalP28634.
SMRP28634. Positions 1-228.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-11195N.
IntActP28634. 5 interactions.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBESCT00000000067; EBESCP00000000067; EBESCG00000000053.
EBESCT00000015483; EBESCP00000014774; EBESCG00000014543.
GeneID949112.
GenomeReviewsGene locus JW0191 in contig AP009048_GR.
Gene locus b0195 in contig U00096_GR.
KEGGecj:JW0191.
eco:b0195.
PATRIC32115503. VBIEscCol129921_0203.

Organism-specific databases

EchoBASEEB1466.
EcoGeneEG11503. yaeB.

Phylogenomic databases

eggNOGCOG1720.
GeneTreeEBGT00050000011310.
HOGENOMHBG419053.
OMASCFKEKF.
PhylomeDBP28634.
ProtClustDBCLSK879574.

Enzyme and pathway databases

BioCycEcoCyc:EG11503-MONOMER.

Gene expression databases

GenevestigatorP28634.

Family and domain databases

InterProIPR001378. UPF0066.
IPR023368. UPF0066_cons_site.
IPR023370. UPF0066_YaeB.
[Graphical view]
Gene3DG3DSA:2.40.30.70. G3DSA:2.40.30.70. 1 hit.
PfamPF01980. UPF0066. 1 hit.
[Graphical view]
SUPFAMSSF118196. SSF118196. 1 hit.
TIGRFAMsTIGR00104. YaeB_AF0241. 1 hit.
PROSITEPS01318. UPF0066. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYAEB_ECOLI
AccessionPrimary (citable) accession number: P28634
Secondary accession number(s): Q47676
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: October 1, 1994
Last modified: January 25, 2012
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

SIMILARITY comments

Index of protein domains and families