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P28572

- SC6A9_RAT

UniProt

P28572 - SC6A9_RAT

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Protein
Sodium- and chloride-dependent glycine transporter 1
Gene
Slc6a9
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at protein leveli

Functioni

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.1 Publication

Kineticsi

  1. KM=123 µM for glycine1 Publication

Vmax=28 nmol/min/mg enzyme with glycine as substrate

GO - Molecular functioni

  1. glycine transmembrane transporter activity Source: RGD
  2. neurotransmitter:sodium symporter activity Source: InterPro
  3. protein binding Source: IntAct
  4. sodium:amino acid symporter activity Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Neurotransmitter transport, Symport, Transport

Protein family/group databases

TCDBi2.A.22.2.2. the neurotransmitter:sodium symporter (nss) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Sodium- and chloride-dependent glycine transporter 1
Short name:
GlyT-1
Short name:
GlyT1
Alternative name(s):
Solute carrier family 6 member 9
Gene namesi
Name:Slc6a9
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 5

Organism-specific databases

RGDi621243. Slc6a9.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4040Cytoplasmic Reviewed prediction
Add
BLAST
Transmembranei41 – 6121Helical; Name=1; Reviewed prediction
Add
BLAST
Transmembranei68 – 8821Helical; Name=2; Reviewed prediction
Add
BLAST
Transmembranei120 – 14021Helical; Name=3; Reviewed prediction
Add
BLAST
Topological domaini141 – 21777Extracellular Reviewed prediction
Add
BLAST
Transmembranei218 – 23821Helical; Name=4; Reviewed prediction
Add
BLAST
Transmembranei247 – 26721Helical; Name=5; Reviewed prediction
Add
BLAST
Transmembranei292 – 31221Helical; Name=6; Reviewed prediction
Add
BLAST
Transmembranei339 – 35921Helical; Name=7; Reviewed prediction
Add
BLAST
Transmembranei382 – 40221Helical; Name=8; Reviewed prediction
Add
BLAST
Transmembranei438 – 45821Helical; Name=9; Reviewed prediction
Add
BLAST
Transmembranei462 – 48221Helical; Name=10; Reviewed prediction
Add
BLAST
Transmembranei502 – 52221Helical; Name=11; Reviewed prediction
Add
BLAST
Transmembranei542 – 56221Helical; Name=12; Reviewed prediction
Add
BLAST
Topological domaini563 – 63876Cytoplasmic Reviewed prediction
Add
BLAST

GO - Cellular componenti

  1. integral component of plasma membrane Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 638638Sodium- and chloride-dependent glycine transporter 1
PRO_0000214782Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi169 – 1691N-linked (GlcNAc...) Reviewed prediction
Glycosylationi172 – 1721N-linked (GlcNAc...) Reviewed prediction
Glycosylationi182 – 1821N-linked (GlcNAc...) Reviewed prediction
Glycosylationi188 – 1881N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

PRIDEiP28572.

Miscellaneous databases

PMAP-CutDBQ63322.

Expressioni

Tissue specificityi

Isoform 1 is only found in the white matter of the CNS. Isoform 2 is found in the gray matter of CNS as well as in macrophages and mast cells in peripherical tissues.3 Publications

Gene expression databases

GenevestigatoriP28572.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
Dlg4P310164EBI-848796,EBI-375655

Protein-protein interaction databases

BioGridi250476. 1 interaction.
IntActiP28572. 2 interactions.
STRINGi10116.ENSRNOP00000026348.

Structurei

3D structure databases

ProteinModelPortaliP28572.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG0733.
GeneTreeiENSGT00740000115427.
HOGENOMiHOG000116406.
HOVERGENiHBG071421.
InParanoidiQ63323.
KOiK05038.
OMAiFQLCRTD.
OrthoDBiEOG793B71.
PhylomeDBiP28572.
TreeFamiTF343812.

Family and domain databases

InterProiIPR000175. Na/ntran_symport.
IPR003028. Na/ntran_symport_glycine_GLY1.
[Graphical view]
PANTHERiPTHR11616. PTHR11616. 1 hit.
PfamiPF00209. SNF. 1 hit.
[Graphical view]
PRINTSiPR01204. GLY1TRNSPORT.
PR00176. NANEUSMPORT.
PROSITEiPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative promoter usage. Align

Isoform 1 (identifier: P28572-2) [UniParc]FASTAAdd to Basket

Also known as: GlyT-1B, GlyT-1

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MAVAHGPVAT SSPEQNGAVP SEATKKDQNL TRGNWGNQIE FVLTSVGYAV    50
GLGNVWRFPY LCYRNGGGAF MFPYFIMLVF CGIPLFFMEL SFGQFASQGC 100
LGVWRISPMF KGVGYGMMVV STYIGIYYNV VICIAFYYFF SSMTHVLPWA 150
YCNNPWNTPD CAGVLDASNL TNGSRPTALS GNLSHLFNYT LQRTSPSEEY 200
WRLYVLKLSD DIGDFGEVRL PLLGCLGVSW VVVFLCLIRG VKSSGKVVYF 250
TATFPYVVLT ILFVRGVTLE GAFTGIMYYL TPKWDKILEA KVWGDAASQI 300
FYSLGCAWGG LITMASYNKF HNNCYRDSVI ISITNCATSV YAGFVIFSIL 350
GFMANHLGVD VSRVADHGPG LAFVAYPEAL TLLPISPLWS LLFFFMLILL 400
GLGTQFCLLE TLVTAIVDEV GNEWILQKKT YVTLGVAVAG FLLGIPLTSQ 450
AGIYWLLLMD NYAASFSLVV ISCIMCVSIM YIYGHRNYFQ DIQMMLGFPP 500
PLFFQICWRF VSPTIIFFIL IFTVIQYRPI TYNHYQYPGW AVAIGFLMAL 550
SSVICIPLYA LFQLCRTDGD TLLQRLKNAT KPSRDWGPAL LEHRTGRYAP 600
TTTPSPEDGF EVQPLHPDKA QIPIVGSNGS SRLQDSRI 638
Length:638
Mass (Da):71,061
Last modified:May 18, 2010 - v2
Checksum:iAB43FCDE767F4AFA
GO
Isoform 2 (identifier: P28572-1) [UniParc]FASTAAdd to Basket

Also known as: GlyT-1A, GlyT-2

The sequence of this isoform differs from the canonical sequence as follows:
     1-15: MAVAHGPVATSSPEQ → MVGKGAKGML

Show »
Length:633
Mass (Da):70,571
Checksum:i7D25B555B97E9E17
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 1515MAVAH…SSPEQ → MVGKGAKGML in isoform 2.
VSP_039239Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti50 – 501V → W in AAC71066. 1 Publication
Sequence conflicti50 – 501V → W in AAC71067. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M95413 mRNA. Translation: AAA41256.1.
M88595 mRNA. Translation: AAA41257.1.
L13600 mRNA. Translation: AAA73557.1.
BC128732 mRNA. Translation: AAI28733.1.
U28975 Genomic DNA. Translation: AAC71066.1.
U28975 Genomic DNA. Translation: AAC71067.1.
PIRiI58140.
JH0673.
RefSeqiNP_446270.1. NM_053818.2. [P28572-1]
XP_006238687.1. XM_006238625.1. [P28572-2]
UniGeneiRn.32110.

Genome annotation databases

EnsembliENSRNOT00000048770; ENSRNOP00000040252; ENSRNOG00000019484. [P28572-1]
GeneIDi116509.
KEGGirno:116509.

Keywords - Coding sequence diversityi

Alternative promoter usage

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M95413 mRNA. Translation: AAA41256.1 .
M88595 mRNA. Translation: AAA41257.1 .
L13600 mRNA. Translation: AAA73557.1 .
BC128732 mRNA. Translation: AAI28733.1 .
U28975 Genomic DNA. Translation: AAC71066.1 .
U28975 Genomic DNA. Translation: AAC71067.1 .
PIRi I58140.
JH0673.
RefSeqi NP_446270.1. NM_053818.2. [P28572-1 ]
XP_006238687.1. XM_006238625.1. [P28572-2 ]
UniGenei Rn.32110.

3D structure databases

ProteinModelPortali P28572.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 250476. 1 interaction.
IntActi P28572. 2 interactions.
STRINGi 10116.ENSRNOP00000026348.

Chemistry

BindingDBi P28572.
ChEMBLi CHEMBL4556.

Protein family/group databases

TCDBi 2.A.22.2.2. the neurotransmitter:sodium symporter (nss) family.

Proteomic databases

PRIDEi P28572.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000048770 ; ENSRNOP00000040252 ; ENSRNOG00000019484 . [P28572-1 ]
GeneIDi 116509.
KEGGi rno:116509.

Organism-specific databases

CTDi 6536.
RGDi 621243. Slc6a9.

Phylogenomic databases

eggNOGi COG0733.
GeneTreei ENSGT00740000115427.
HOGENOMi HOG000116406.
HOVERGENi HBG071421.
InParanoidi Q63323.
KOi K05038.
OMAi FQLCRTD.
OrthoDBi EOG793B71.
PhylomeDBi P28572.
TreeFami TF343812.

Miscellaneous databases

NextBioi 619129.
PMAP-CutDB Q63322.
PROi P28572.

Gene expression databases

Genevestigatori P28572.

Family and domain databases

InterProi IPR000175. Na/ntran_symport.
IPR003028. Na/ntran_symport_glycine_GLY1.
[Graphical view ]
PANTHERi PTHR11616. PTHR11616. 1 hit.
Pfami PF00209. SNF. 1 hit.
[Graphical view ]
PRINTSi PR01204. GLY1TRNSPORT.
PR00176. NANEUSMPORT.
PROSITEi PS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning, expression, and localization of a rat brain high-affinity glycine transporter."
    Guastella J., Brecha N., Weigmann C., Lester H.A., Davidson N.
    Proc. Natl. Acad. Sci. U.S.A. 89:7189-7193(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY.
    Strain: Sprague-Dawley.
    Tissue: Brain.
  2. "Cloning and expression of a glycine transporter reveal colocalization with NMDA receptors."
    Smith K.E., Borden L.A., Hartig P.R., Branchek T.A., Weinshank R.L.
    Neuron 8:927-935(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, BIOPHYSICOCHEMICAL PROPERTIES, TISSUE SPECIFICITY.
    Tissue: Brain.
  3. "Two glycine transporter variants with distinct localization in the CNS and peripheral tissues are encoded by a common gene."
    Borowsky B., Mezey E., Hoffman B.J.
    Neuron 10:851-863(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), TISSUE SPECIFICITY.
    Tissue: Blood.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Brain.
  5. "Analysis of a gene encoding two glycine transporter variants reveals alternative promoter usage and a novel gene structure."
    Borowsky B., Hoffman B.J.
    J. Biol. Chem. 273:29077-29085(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-67 (ISOFORMS 1 AND 2), ALTERNATIVE PROMOTER USAGE.
    Strain: Sprague-Dawley.
    Tissue: Brain.

Entry informationi

Entry nameiSC6A9_RAT
AccessioniPrimary (citable) accession number: P28572
Secondary accession number(s): A1A5N0, Q63322, Q63323
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: May 18, 2010
Last modified: June 11, 2014
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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