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P28565

- 5HT1D_RAT

UniProt

P28565 - 5HT1D_RAT

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Protein

5-hydroxytryptamine receptor 1D

Gene
Htr1d
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

G-protein coupled receptor for 5-hydroxytryptamine (serotonin). Also functions as a receptor for various alkaloids and psychoactive substances. Ligand binding causes a conformation change that triggers signaling via guanine nucleotide-binding proteins (G proteins) and modulates the activity of down-stream effectors, such as adenylate cyclase. Signaling inhibits adenylate cyclase activity. Regulates the release of 5-hydroxytryptamine in the brain, and thereby affects neural activity. May also play a role in regulating the release of other neurotransmitters. May play a role in vasoconstriction.2 Publications

GO - Molecular functioni

  1. serotonin binding Source: Ensembl
  2. serotonin receptor activity Source: UniProtKB

GO - Biological processi

  1. adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway Source: UniProtKB
  2. intestine smooth muscle contraction Source: Ensembl
  3. regulation of behavior Source: InterPro
  4. regulation of locomotion Source: InterPro
  5. response to toxic substance Source: Ensembl
  6. synaptic transmission Source: InterPro
  7. vasoconstriction Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

G-protein coupled receptor, Receptor, Transducer

Names & Taxonomyi

Protein namesi
Recommended name:
5-hydroxytryptamine receptor 1D
Short name:
5-HT-1D
Short name:
5-HT1D
Alternative name(s):
Serotonin receptor 1D
Gene namesi
Name:Htr1d
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 5

Organism-specific databases

RGDi2847. Htr1d.

Subcellular locationi

Cell membrane; Multi-pass membrane protein 2 Publications

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3535Extracellular By similarityAdd
BLAST
Transmembranei36 – 6126Helical; Name=1; By similarityAdd
BLAST
Topological domaini62 – 7211Cytoplasmic By similarityAdd
BLAST
Transmembranei73 – 9523Helical; Name=2; By similarityAdd
BLAST
Topological domaini96 – 10914Extracellular By similarityAdd
BLAST
Transmembranei110 – 13122Helical; Name=3; By similarityAdd
BLAST
Topological domaini132 – 15120Cytoplasmic By similarityAdd
BLAST
Transmembranei152 – 17322Helical; Name=4; By similarityAdd
BLAST
Topological domaini174 – 19118Extracellular By similarityAdd
BLAST
Transmembranei192 – 21423Helical; Name=5; By similarityAdd
BLAST
Topological domaini215 – 29985Cytoplasmic By similarityAdd
BLAST
Transmembranei300 – 32324Helical; Name=6; By similarityAdd
BLAST
Topological domaini324 – 3329Extracellular By similarity
Transmembranei333 – 35725Helical; Name=7; By similarityAdd
BLAST
Topological domaini358 – 37417Cytoplasmic By similarityAdd
BLAST

GO - Cellular componenti

  1. integral component of plasma membrane Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 3743745-hydroxytryptamine receptor 1DPRO_0000068931Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi5 – 51N-linked (GlcNAc...) Reviewed prediction
Glycosylationi17 – 171N-linked (GlcNAc...) Reviewed prediction
Glycosylationi21 – 211N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi108 ↔ 185 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP28565.
PRIDEiP28565.

PTM databases

PhosphoSiteiP28565.

Expressioni

Tissue specificityi

Detected in dorsal raphe.1 Publication

Gene expression databases

GenevestigatoriP28565.

Interactioni

Subunit structurei

Homodimer. Heterodimer with HTR1B By similarity.

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000016047.

Structurei

3D structure databases

ProteinModelPortaliP28565.

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni111 – 12010Agonist binding By similarity
Regioni311 – 3155Agonist binding By similarity

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi132 – 1343DRY motif; important for ligand-induced conformation changes By similarity
Motifi349 – 3535NPxxY motif; important for ligand-induced conformation changes and signaling By similarity

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG249628.
GeneTreeiENSGT00750000117301.
HOGENOMiHOG000239242.
HOVERGENiHBG106962.
InParanoidiP28565.
KOiK04153.
OMAiCRDSCWI.
OrthoDBiEOG7NCV3Q.
PhylomeDBiP28565.
TreeFamiTF316350.

Family and domain databases

Gene3Di1.20.1070.10. 2 hits.
InterProiIPR000505. 5HT1D_rcpt.
IPR002231. 5HT_rcpt.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view]
PANTHERiPTHR24247:SF17. PTHR24247:SF17. 1 hit.
PfamiPF00001. 7tm_1. 1 hit.
[Graphical view]
PRINTSiPR00514. 5HT1DRECEPTR.
PR01101. 5HTRECEPTOR.
PR00237. GPCRRHODOPSN.
PROSITEiPS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P28565-1 [UniParc]FASTAAdd to Basket

« Hide

MSLPNQSLEG LPQEASNRSL NATGAWDPEV LQALRISLVV VLSIITLATV    50
LSNAFVLTTI LLTKKLHTPA NYLIGSLATT DLLVSILVMP ISIAYTTTRT 100
WNFGQILCDI WVSSDITCCT ASILHLCVIA LDRYWAITDA LEYSKRRTAG 150
HAAAMIAAVW AISICISIPP LFWRQATAHE EMSDCLVNTS QISYTIYSTC 200
GAFYIPSILL IILYGRIYVA ARSRILNPPS LYGKRFTTAQ LITGSAGSSL 250
CSLNPSLHES HTHTVGSPLF FNQVKIKLAD SILERKRISA ARERKATKTL 300
GIILGAFIIC WLPFFVVSLV LPICRDSCWI HPALFDFFTW LGYLNSLINP 350
VIYTVFNEDF RQAFQRVVHF RKAS 374
Length:374
Mass (Da):41,540
Last modified:December 1, 1992 - v1
Checksum:i345CBD528317DA21
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M89953 Genomic DNA. Translation: AAA40614.1.
PIRiI77467.
RefSeqiNP_036984.1. NM_012852.1.
UniGeneiRn.34834.

Genome annotation databases

EnsembliENSRNOT00000016046; ENSRNOP00000016047; ENSRNOG00000012038.
GeneIDi25323.
KEGGirno:25323.
UCSCiRGD:2847. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
M89953 Genomic DNA. Translation: AAA40614.1 .
PIRi I77467.
RefSeqi NP_036984.1. NM_012852.1.
UniGenei Rn.34834.

3D structure databases

ProteinModelPortali P28565.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000016047.

Chemistry

BindingDBi P28565.
ChEMBLi CHEMBL5450.
GuidetoPHARMACOLOGYi 3.

Protein family/group databases

GPCRDBi Search...

PTM databases

PhosphoSitei P28565.

Proteomic databases

PaxDbi P28565.
PRIDEi P28565.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000016046 ; ENSRNOP00000016047 ; ENSRNOG00000012038 .
GeneIDi 25323.
KEGGi rno:25323.
UCSCi RGD:2847. rat.

Organism-specific databases

CTDi 3352.
RGDi 2847. Htr1d.

Phylogenomic databases

eggNOGi NOG249628.
GeneTreei ENSGT00750000117301.
HOGENOMi HOG000239242.
HOVERGENi HBG106962.
InParanoidi P28565.
KOi K04153.
OMAi CRDSCWI.
OrthoDBi EOG7NCV3Q.
PhylomeDBi P28565.
TreeFami TF316350.

Miscellaneous databases

NextBioi 606173.
PROi P28565.

Gene expression databases

Genevestigatori P28565.

Family and domain databases

Gene3Di 1.20.1070.10. 2 hits.
InterProi IPR000505. 5HT1D_rcpt.
IPR002231. 5HT_rcpt.
IPR000276. GPCR_Rhodpsn.
IPR017452. GPCR_Rhodpsn_7TM.
[Graphical view ]
PANTHERi PTHR24247:SF17. PTHR24247:SF17. 1 hit.
Pfami PF00001. 7tm_1. 1 hit.
[Graphical view ]
PRINTSi PR00514. 5HT1DRECEPTR.
PR01101. 5HTRECEPTOR.
PR00237. GPCRRHODOPSN.
PROSITEi PS00237. G_PROTEIN_RECEP_F1_1. 1 hit.
PS50262. G_PROTEIN_RECEP_F1_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Distinct 5-HT1B and 5-HT1D serotonin receptors in rat: structural and pharmacological comparison of the two cloned receptors."
    Hamblin M.W., McGuffin R.W., Metcalf M.A., Dorsa D.M., Merchant K.M.
    Mol. Cell. Neurosci. 3:578-587(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY.
  2. "Sequence and functional analysis of cloned guinea pig and rat serotonin 5-HT1D receptors: common pharmacological features within the 5-HT1D receptor subfamily."
    Wurch T., Palmier C., Colpaert F.C., Pauwels P.J.
    J. Neurochem. 68:410-418(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, SUBCELLULAR LOCATION.

Entry informationi

Entry namei5HT1D_RAT
AccessioniPrimary (citable) accession number: P28565
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: June 11, 2014
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. 7-transmembrane G-linked receptors
    List of 7-transmembrane G-linked receptor entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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