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P28471

- GBRA4_RAT

UniProt

P28471 - GBRA4_RAT

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Protein
Gamma-aminobutyric acid receptor subunit alpha-4
Gene
Gabra4
Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

GO - Molecular functioni

  1. GABA-A receptor activity Source: RGD
  2. chloride channel activity Source: UniProtKB-KW
  3. extracellular ligand-gated ion channel activity Source: InterPro

GO - Biological processi

  1. central nervous system development Source: Ensembl
  2. gamma-aminobutyric acid signaling pathway Source: InterPro
  3. regulation of response to drug Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Chloride channel, Ion channel, Ligand-gated ion channel, Receptor

Keywords - Biological processi

Ion transport, Transport

Keywords - Ligandi

Chloride

Enzyme and pathway databases

ReactomeiREACT_199021. GABA A receptor activation.
REACT_199029. Ligand-gated ion channel transport.

Names & Taxonomyi

Protein namesi
Recommended name:
Gamma-aminobutyric acid receptor subunit alpha-4
Alternative name(s):
GABA(A) receptor subunit alpha-4
Gene namesi
Name:Gabra4
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 14

Organism-specific databases

RGDi621670. Gabra4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini36 – 258223Extracellular Inferred
Add
BLAST
Transmembranei259 – 28022Helical; Inferred
Add
BLAST
Transmembranei285 – 30622Helical; Inferred
Add
BLAST
Transmembranei318 – 34023Helical; Inferred
Add
BLAST
Topological domaini341 – 521181Cytoplasmic Inferred
Add
BLAST
Transmembranei522 – 54120Helical; Inferred
Add
BLAST

GO - Cellular componenti

  1. cell junction Source: UniProtKB-KW
  2. chloride channel complex Source: UniProtKB-KW
  3. postsynaptic membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membrane, Membrane, Postsynaptic cell membrane, Synapse

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3535 Reviewed prediction
Add
BLAST
Chaini36 – 552517Gamma-aminobutyric acid receptor subunit alpha-4
PRO_0000000443Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi47 – 471N-linked (GlcNAc...) Reviewed prediction
Glycosylationi144 – 1441N-linked (GlcNAc...) Reviewed prediction
Glycosylationi157 – 1571N-linked (GlcNAc...) Reviewed prediction
Disulfide bondi172 ↔ 186 By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP28471.
PRIDEiP28471.

PTM databases

PhosphoSiteiP28471.

Expressioni

Gene expression databases

GenevestigatoriP28471.

Interactioni

Subunit structurei

Generally pentameric. There are five types of GABA(A) receptor chains: alpha, beta, gamma, delta, and rho.

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000003191.

Structurei

3D structure databases

ProteinModelPortaliP28471.
SMRiP28471. Positions 285-344.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG238757.
GeneTreeiENSGT00550000074441.
HOVERGENiHBG051707.
KOiK05175.
OMAiPNPFSHA.
OrthoDBiEOG7JX342.

Family and domain databases

Gene3Di2.70.170.10. 1 hit.
InterProiIPR006028. GABAA/Glycine_rcpt.
IPR001390. GABAAa_rcpt.
IPR005434. GABBAa4_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
[Graphical view]
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view]
PRINTSiPR01079. GABAARALPHA.
PR01617. GABAARALPHA4.
PR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 2 hits.
TIGRFAMsiTIGR00860. LIC. 1 hit.
PROSITEiPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P28471-1 [UniParc]FASTAAdd to Basket

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MVSVQKVPAI VLCSGVSLAL LHVLCLATCL NESPGQNSKD EKLCPENFTR    50
ILDSLLDGYD NRLRPGFGGP VTEVKTDIYV TSFGPVSDVE MEYTMDVFFR 100
QTWIDKRLKY DGPIEILRLN NMMVTKVWTP DTFFRNGKKS VSHNMTAPNK 150
LFRIMRNGTI LYTMRLTISA ECPMRLVDFP MDGHACPLKF GSYAYPKSEM 200
IYTWTKGPEK SVEVPKESSS LVQYDLIGQT VSSETIKSIT GEYIVMTVYF 250
HLRRKMGYFM IQTYIPCIMT VILSQVSFWI NKESVPARTV FGITTVLTMT 300
TLSISARHSL PKVSYATAMD WFIAVCFAFV FSALIEFAAV NYFTNIQMQK 350
AKKKISKPPP EVPAAPVLKE KHTETSLQNT HANLNMRKRT NALVHSESDV 400
NSRTEVGNHS SKTTAAQESS ETTPKAHLAS SPNPFSRANA AETISAAARG 450
LSSAASPSPH GTLQPAPLRS ASARPAFGAR LGRIKTTVNT TGVPGNVSAT 500
PPPSAPPPSG SGTSKIDKYA RILFPVTFGA FNMVYWVVYL SKDTMEKSES 550
LM 552
Length:552
Mass (Da):60,951
Last modified:December 1, 1992 - v1
Checksum:i3823335C3554115D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L08493 Genomic DNA. Translation: AAC42032.1.
S55933 mRNA. Translation: AAB19902.1.
PIRiS17551.
RefSeqiNP_542154.3. NM_080587.3.
UniGeneiRn.81205.

Genome annotation databases

EnsembliENSRNOT00000003191; ENSRNOP00000003191; ENSRNOG00000002336.
GeneIDi140675.
KEGGirno:140675.
UCSCiRGD:621670. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L08493 Genomic DNA. Translation: AAC42032.1 .
S55933 mRNA. Translation: AAB19902.1 .
PIRi S17551.
RefSeqi NP_542154.3. NM_080587.3.
UniGenei Rn.81205.

3D structure databases

ProteinModelPortali P28471.
SMRi P28471. Positions 285-344.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000003191.

Chemistry

BindingDBi P28471.
ChEMBLi CHEMBL2096683.
GuidetoPHARMACOLOGYi 407.

PTM databases

PhosphoSitei P28471.

Proteomic databases

PaxDbi P28471.
PRIDEi P28471.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000003191 ; ENSRNOP00000003191 ; ENSRNOG00000002336 .
GeneIDi 140675.
KEGGi rno:140675.
UCSCi RGD:621670. rat.

Organism-specific databases

CTDi 2557.
RGDi 621670. Gabra4.

Phylogenomic databases

eggNOGi NOG238757.
GeneTreei ENSGT00550000074441.
HOVERGENi HBG051707.
KOi K05175.
OMAi PNPFSHA.
OrthoDBi EOG7JX342.

Enzyme and pathway databases

Reactomei REACT_199021. GABA A receptor activation.
REACT_199029. Ligand-gated ion channel transport.

Miscellaneous databases

NextBioi 620671.

Gene expression databases

Genevestigatori P28471.

Family and domain databases

Gene3Di 2.70.170.10. 1 hit.
InterProi IPR006028. GABAA/Glycine_rcpt.
IPR001390. GABAAa_rcpt.
IPR005434. GABBAa4_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
[Graphical view ]
PANTHERi PTHR18945. PTHR18945. 1 hit.
Pfami PF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view ]
PRINTSi PR01079. GABAARALPHA.
PR01617. GABAARALPHA4.
PR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SUPFAMi SSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 2 hits.
TIGRFAMsi TIGR00860. LIC. 1 hit.
PROSITEi PS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning, pharmacological characteristics and expression pattern of the rat GABAA receptor alpha 4 subunit."
    Wisden W., Herb A., Wieland H., Keinaenen K., Lueddens H., Seeburg P.H.
    FEBS Lett. 289:227-230(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Entry informationi

Entry nameiGBRA4_RAT
AccessioniPrimary (citable) accession number: P28471
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 1992
Last sequence update: December 1, 1992
Last modified: September 3, 2014
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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