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P27999

- RPB9_YEAST

UniProt

P27999 - RPB9_YEAST

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Protein

DNA-directed RNA polymerase II subunit RPB9

Gene

RPB9

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB9 is part of the upper jaw surrounding the central large cleft and thought to grab the incoming DNA template. Involved in the regulation of transcription elongation. Involved in DNA repair of damage in the transcribed strand. Mediates a transcription-coupled repair (TCR) subpathway of nucleotide excision repair (NER).1 Publication

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi7 – 71Zinc 1
Metal bindingi10 – 101Zinc 1
Metal bindingi29 – 291Zinc 1
Metal bindingi32 – 321Zinc 1
Metal bindingi75 – 751Zinc 2
Metal bindingi78 – 781Zinc 2
Metal bindingi103 – 1031Zinc 2
Metal bindingi106 – 1061Zinc 2

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri7 – 3226C4-typeSequence AnalysisAdd
BLAST
Zinc fingeri71 – 11141TFIIS-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter Source: SGD
  2. transcription, RNA-templated Source: GOC
  3. transcription-coupled nucleotide-excision repair Source: SGD
  4. transcription from RNA polymerase II promoter Source: SGD
  5. transcription initiation from RNA polymerase II promoter Source: SGD
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repair, Transcription

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-30573-MONOMER.
ReactomeiREACT_191540. mRNA Splicing - Minor Pathway.
REACT_229646. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_232590. Transcription-coupled NER (TC-NER).
REACT_235070. Dual incision reaction in TC-NER.
REACT_236803. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_240372. mRNA Capping.
REACT_247354. Formation of transcription-coupled NER (TC-NER) repair complex.
REACT_249293. RNA Polymerase II Transcription Initiation.
REACT_249645. Formation of the Early Elongation Complex.
REACT_250507. RNA Polymerase II Pre-transcription Events.
REACT_252915. RNA Pol II CTD phosphorylation and interaction with CE.
REACT_257112. RNA Polymerase II Promoter Escape.
REACT_261636. Processing of Capped Intron-Containing Pre-mRNA.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase II subunit RPB9
Short name:
RNA polymerase II subunit B9
Alternative name(s):
B12.6
DNA-directed RNA polymerase II 14.2 kDa polypeptide
DNA-directed RNA polymerase II subunit 9
Gene namesi
Name:RPB9
Ordered Locus Names:YGL070C
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311: Chromosome VII

Organism-specific databases

CYGDiYGL070c.
SGDiS000003038. RPB9.

Subcellular locationi

GO - Cellular componenti

  1. DNA-directed RNA polymerase II, core complex Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

DNA-directed RNA polymerase, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 122122DNA-directed RNA polymerase II subunit RPB9PRO_0000121474Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei40 – 401Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP27999.
PeptideAtlasiP27999.

Expressioni

Gene expression databases

GenevestigatoriP27999.

Interactioni

Subunit structurei

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.3 Publications

Protein-protein interaction databases

BioGridi33178. 76 interactions.
DIPiDIP-610N.
IntActiP27999. 17 interactions.
MINTiMINT-474033.
STRINGi4932.YGL070C.

Structurei

Secondary structure

1
122
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 103Combined sources
Beta strandi15 – 195Combined sources
Turni20 – 234Combined sources
Beta strandi24 – 285Combined sources
Beta strandi30 – 334Combined sources
Beta strandi35 – 373Combined sources
Beta strandi41 – 499Combined sources
Turni52 – 576Combined sources
Helixi62 – 643Combined sources
Beta strandi66 – 683Combined sources
Turni76 – 783Combined sources
Beta strandi83 – 875Combined sources
Beta strandi92 – 943Combined sources
Beta strandi99 – 1035Combined sources
Turni104 – 1063Combined sources
Beta strandi109 – 1113Combined sources
Beta strandi114 – 1163Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1I3QX-ray3.10I1-122[»]
1I50X-ray2.80I1-122[»]
1I6HX-ray3.30I1-122[»]
1K83X-ray2.80I1-122[»]
1NIKX-ray4.10I1-122[»]
1NT9X-ray4.20I1-122[»]
1PQVX-ray3.80I1-122[»]
1R5UX-ray4.50I1-122[»]
1R9SX-ray4.25I1-122[»]
1R9TX-ray3.50I1-122[»]
1SFOX-ray3.61I1-122[»]
1TWAX-ray3.20I1-122[»]
1TWCX-ray3.00I1-122[»]
1TWFX-ray2.30I1-122[»]
1TWGX-ray3.30I1-122[»]
1TWHX-ray3.40I1-122[»]
1WCMX-ray3.80I1-122[»]
1Y1VX-ray3.80I1-122[»]
1Y1WX-ray4.00I1-122[»]
1Y1YX-ray4.00I1-122[»]
1Y77X-ray4.50I1-122[»]
2B63X-ray3.80I1-122[»]
2B8KX-ray4.15I1-122[»]
2E2HX-ray3.95I1-122[»]
2E2IX-ray3.41I1-122[»]
2E2JX-ray3.50I1-122[»]
2JA5X-ray3.80I1-122[»]
2JA6X-ray4.00I1-122[»]
2JA7X-ray3.80I/U1-122[»]
2JA8X-ray3.80I1-122[»]
2NVQX-ray2.90I1-122[»]
2NVTX-ray3.36I1-122[»]
2NVXX-ray3.60I1-122[»]
2NVYX-ray3.40I1-122[»]
2NVZX-ray4.30I1-122[»]
2R7ZX-ray3.80I1-122[»]
2R92X-ray3.80I1-122[»]
2R93X-ray4.00I1-122[»]
2VUMX-ray3.40I1-122[»]
2YU9X-ray3.40I1-122[»]
3CQZX-ray2.80I1-122[»]
3FKIX-ray3.88I1-122[»]
3GTGX-ray3.78I1-122[»]
3GTJX-ray3.42I1-122[»]
3GTKX-ray3.80I1-122[»]
3GTLX-ray3.38I1-122[»]
3GTMX-ray3.80I1-122[»]
3GTOX-ray4.00I1-122[»]
3GTPX-ray3.90I1-122[»]
3GTQX-ray3.80I1-122[»]
3H3VX-ray4.00J1-122[»]
3HOUX-ray3.20I/U1-122[»]
3HOVX-ray3.50I1-122[»]
3HOWX-ray3.60I1-122[»]
3HOXX-ray3.65I1-122[»]
3HOYX-ray3.40I1-122[»]
3HOZX-ray3.65I1-122[»]
3I4MX-ray3.70I1-122[»]
3I4NX-ray3.90I1-122[»]
3J0Kelectron microscopy36.00I1-122[»]
3J1Nelectron microscopy16.00I1-122[»]
3K1FX-ray4.30I1-122[»]
3K7AX-ray3.80I1-122[»]
3M3YX-ray3.18I1-122[»]
3M4OX-ray3.57I1-122[»]
3PO2X-ray3.30I1-122[»]
3PO3X-ray3.30I1-122[»]
3QT1X-ray4.30I1-87[»]
3RZDX-ray3.30I1-122[»]
3RZOX-ray3.00I1-122[»]
3S14X-ray2.85I1-122[»]
3S15X-ray3.30I1-122[»]
3S16X-ray3.24I1-122[»]
3S17X-ray3.20I1-122[»]
3S1MX-ray3.13I1-122[»]
3S1NX-ray3.10I1-122[»]
3S1QX-ray3.30I1-122[»]
3S1RX-ray3.20I1-122[»]
3S2DX-ray3.20I1-122[»]
3S2HX-ray3.30I1-122[»]
4A3BX-ray3.50I1-122[»]
4A3CX-ray3.50I1-122[»]
4A3DX-ray3.40I1-122[»]
4A3EX-ray3.40I1-122[»]
4A3FX-ray3.50I1-122[»]
4A3GX-ray3.50I1-122[»]
4A3IX-ray3.80I1-122[»]
4A3JX-ray3.70I1-122[»]
4A3KX-ray3.50I1-122[»]
4A3LX-ray3.50I1-122[»]
4A3MX-ray3.90I1-122[»]
4A93X-ray3.40I1-122[»]
4BBRX-ray3.40I1-122[»]
4BBSX-ray3.60I1-122[»]
4BXXX-ray3.28I1-122[»]
4BXZX-ray4.80I1-122[»]
4BY1X-ray3.60I1-122[»]
4BY7X-ray3.15I1-122[»]
ProteinModelPortaliP27999.
SMRiP27999. Positions 1-122.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP27999.

Family & Domainsi

Sequence similaritiesi

Contains 1 TFIIS-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri7 – 3226C4-typeSequence AnalysisAdd
BLAST
Zinc fingeri71 – 11141TFIIS-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiCOG1594.
GeneTreeiENSGT00550000075063.
HOGENOMiHOG000228134.
InParanoidiP27999.
KOiK03017.
OMAiMHEIDEL.
OrthoDBiEOG7B05RW.

Family and domain databases

InterProiIPR019761. DNA-dir_RNA_pol-M_15_CS.
IPR001529. DNA-dir_RNA_pol_M/15kDasu.
IPR012164. DNA-dir_RNApol_C11.
IPR001222. Znf_TFIIS.
[Graphical view]
PfamiPF02150. RNA_POL_M_15KD. 1 hit.
PF01096. TFIIS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF005586. RNApol_RpoM. 1 hit.
SMARTiSM00661. RPOL9. 1 hit.
SM00440. ZnF_C2C2. 1 hit.
[Graphical view]
PROSITEiPS01030. RNA_POL_M_15KD. 1 hit.
PS00466. ZF_TFIIS_1. 1 hit.
PS51133. ZF_TFIIS_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27999-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTTFRFCRDC NNMLYPREDK ENNRLLFECR TCSYVEEAGS PLVYRHELIT
60 70 80 90 100
NIGETAGVVQ DIGSDPTLPR SDRECPKCHS RENVFFQSQQ RRKDTSMVLF
110 120
FVCLSCSHIF TSDQKNKRTQ FS
Length:122
Mass (Da):14,288
Last modified:August 1, 1992 - v1
Checksum:iA80D69678A722881
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M73060 Genomic DNA. Translation: AAA34997.1.
Z72592 Genomic DNA. Translation: CAA96774.1.
AY557799 Genomic DNA. Translation: AAS56125.1.
BK006941 Genomic DNA. Translation: DAA08033.1.
PIRiA41016. RNBY29.
RefSeqiNP_011445.1. NM_001180935.1.

Genome annotation databases

EnsemblFungiiYGL070C; YGL070C; YGL070C.
GeneIDi852810.
KEGGisce:YGL070C.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M73060 Genomic DNA. Translation: AAA34997.1 .
Z72592 Genomic DNA. Translation: CAA96774.1 .
AY557799 Genomic DNA. Translation: AAS56125.1 .
BK006941 Genomic DNA. Translation: DAA08033.1 .
PIRi A41016. RNBY29.
RefSeqi NP_011445.1. NM_001180935.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1I3Q X-ray 3.10 I 1-122 [» ]
1I50 X-ray 2.80 I 1-122 [» ]
1I6H X-ray 3.30 I 1-122 [» ]
1K83 X-ray 2.80 I 1-122 [» ]
1NIK X-ray 4.10 I 1-122 [» ]
1NT9 X-ray 4.20 I 1-122 [» ]
1PQV X-ray 3.80 I 1-122 [» ]
1R5U X-ray 4.50 I 1-122 [» ]
1R9S X-ray 4.25 I 1-122 [» ]
1R9T X-ray 3.50 I 1-122 [» ]
1SFO X-ray 3.61 I 1-122 [» ]
1TWA X-ray 3.20 I 1-122 [» ]
1TWC X-ray 3.00 I 1-122 [» ]
1TWF X-ray 2.30 I 1-122 [» ]
1TWG X-ray 3.30 I 1-122 [» ]
1TWH X-ray 3.40 I 1-122 [» ]
1WCM X-ray 3.80 I 1-122 [» ]
1Y1V X-ray 3.80 I 1-122 [» ]
1Y1W X-ray 4.00 I 1-122 [» ]
1Y1Y X-ray 4.00 I 1-122 [» ]
1Y77 X-ray 4.50 I 1-122 [» ]
2B63 X-ray 3.80 I 1-122 [» ]
2B8K X-ray 4.15 I 1-122 [» ]
2E2H X-ray 3.95 I 1-122 [» ]
2E2I X-ray 3.41 I 1-122 [» ]
2E2J X-ray 3.50 I 1-122 [» ]
2JA5 X-ray 3.80 I 1-122 [» ]
2JA6 X-ray 4.00 I 1-122 [» ]
2JA7 X-ray 3.80 I/U 1-122 [» ]
2JA8 X-ray 3.80 I 1-122 [» ]
2NVQ X-ray 2.90 I 1-122 [» ]
2NVT X-ray 3.36 I 1-122 [» ]
2NVX X-ray 3.60 I 1-122 [» ]
2NVY X-ray 3.40 I 1-122 [» ]
2NVZ X-ray 4.30 I 1-122 [» ]
2R7Z X-ray 3.80 I 1-122 [» ]
2R92 X-ray 3.80 I 1-122 [» ]
2R93 X-ray 4.00 I 1-122 [» ]
2VUM X-ray 3.40 I 1-122 [» ]
2YU9 X-ray 3.40 I 1-122 [» ]
3CQZ X-ray 2.80 I 1-122 [» ]
3FKI X-ray 3.88 I 1-122 [» ]
3GTG X-ray 3.78 I 1-122 [» ]
3GTJ X-ray 3.42 I 1-122 [» ]
3GTK X-ray 3.80 I 1-122 [» ]
3GTL X-ray 3.38 I 1-122 [» ]
3GTM X-ray 3.80 I 1-122 [» ]
3GTO X-ray 4.00 I 1-122 [» ]
3GTP X-ray 3.90 I 1-122 [» ]
3GTQ X-ray 3.80 I 1-122 [» ]
3H3V X-ray 4.00 J 1-122 [» ]
3HOU X-ray 3.20 I/U 1-122 [» ]
3HOV X-ray 3.50 I 1-122 [» ]
3HOW X-ray 3.60 I 1-122 [» ]
3HOX X-ray 3.65 I 1-122 [» ]
3HOY X-ray 3.40 I 1-122 [» ]
3HOZ X-ray 3.65 I 1-122 [» ]
3I4M X-ray 3.70 I 1-122 [» ]
3I4N X-ray 3.90 I 1-122 [» ]
3J0K electron microscopy 36.00 I 1-122 [» ]
3J1N electron microscopy 16.00 I 1-122 [» ]
3K1F X-ray 4.30 I 1-122 [» ]
3K7A X-ray 3.80 I 1-122 [» ]
3M3Y X-ray 3.18 I 1-122 [» ]
3M4O X-ray 3.57 I 1-122 [» ]
3PO2 X-ray 3.30 I 1-122 [» ]
3PO3 X-ray 3.30 I 1-122 [» ]
3QT1 X-ray 4.30 I 1-87 [» ]
3RZD X-ray 3.30 I 1-122 [» ]
3RZO X-ray 3.00 I 1-122 [» ]
3S14 X-ray 2.85 I 1-122 [» ]
3S15 X-ray 3.30 I 1-122 [» ]
3S16 X-ray 3.24 I 1-122 [» ]
3S17 X-ray 3.20 I 1-122 [» ]
3S1M X-ray 3.13 I 1-122 [» ]
3S1N X-ray 3.10 I 1-122 [» ]
3S1Q X-ray 3.30 I 1-122 [» ]
3S1R X-ray 3.20 I 1-122 [» ]
3S2D X-ray 3.20 I 1-122 [» ]
3S2H X-ray 3.30 I 1-122 [» ]
4A3B X-ray 3.50 I 1-122 [» ]
4A3C X-ray 3.50 I 1-122 [» ]
4A3D X-ray 3.40 I 1-122 [» ]
4A3E X-ray 3.40 I 1-122 [» ]
4A3F X-ray 3.50 I 1-122 [» ]
4A3G X-ray 3.50 I 1-122 [» ]
4A3I X-ray 3.80 I 1-122 [» ]
4A3J X-ray 3.70 I 1-122 [» ]
4A3K X-ray 3.50 I 1-122 [» ]
4A3L X-ray 3.50 I 1-122 [» ]
4A3M X-ray 3.90 I 1-122 [» ]
4A93 X-ray 3.40 I 1-122 [» ]
4BBR X-ray 3.40 I 1-122 [» ]
4BBS X-ray 3.60 I 1-122 [» ]
4BXX X-ray 3.28 I 1-122 [» ]
4BXZ X-ray 4.80 I 1-122 [» ]
4BY1 X-ray 3.60 I 1-122 [» ]
4BY7 X-ray 3.15 I 1-122 [» ]
ProteinModelPortali P27999.
SMRi P27999. Positions 1-122.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 33178. 76 interactions.
DIPi DIP-610N.
IntActi P27999. 17 interactions.
MINTi MINT-474033.
STRINGi 4932.YGL070C.

Proteomic databases

PaxDbi P27999.
PeptideAtlasi P27999.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii YGL070C ; YGL070C ; YGL070C .
GeneIDi 852810.
KEGGi sce:YGL070C.

Organism-specific databases

CYGDi YGL070c.
SGDi S000003038. RPB9.

Phylogenomic databases

eggNOGi COG1594.
GeneTreei ENSGT00550000075063.
HOGENOMi HOG000228134.
InParanoidi P27999.
KOi K03017.
OMAi MHEIDEL.
OrthoDBi EOG7B05RW.

Enzyme and pathway databases

BioCyci YEAST:G3O-30573-MONOMER.
Reactomei REACT_191540. mRNA Splicing - Minor Pathway.
REACT_229646. RNA Polymerase II Transcription Initiation And Promoter Clearance.
REACT_232590. Transcription-coupled NER (TC-NER).
REACT_235070. Dual incision reaction in TC-NER.
REACT_236803. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_240372. mRNA Capping.
REACT_247354. Formation of transcription-coupled NER (TC-NER) repair complex.
REACT_249293. RNA Polymerase II Transcription Initiation.
REACT_249645. Formation of the Early Elongation Complex.
REACT_250507. RNA Polymerase II Pre-transcription Events.
REACT_252915. RNA Pol II CTD phosphorylation and interaction with CE.
REACT_257112. RNA Polymerase II Promoter Escape.
REACT_261636. Processing of Capped Intron-Containing Pre-mRNA.

Miscellaneous databases

EvolutionaryTracei P27999.
NextBioi 972339.
PROi P27999.

Gene expression databases

Genevestigatori P27999.

Family and domain databases

InterProi IPR019761. DNA-dir_RNA_pol-M_15_CS.
IPR001529. DNA-dir_RNA_pol_M/15kDasu.
IPR012164. DNA-dir_RNApol_C11.
IPR001222. Znf_TFIIS.
[Graphical view ]
Pfami PF02150. RNA_POL_M_15KD. 1 hit.
PF01096. TFIIS_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF005586. RNApol_RpoM. 1 hit.
SMARTi SM00661. RPOL9. 1 hit.
SM00440. ZnF_C2C2. 1 hit.
[Graphical view ]
PROSITEi PS01030. RNA_POL_M_15KD. 1 hit.
PS00466. ZF_TFIIS_1. 1 hit.
PS51133. ZF_TFIIS_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Yeast RNA polymerase II subunit RPB9 is essential for growth at temperature extremes."
    Woychik N.A., Lane W.S., Young R.A.
    J. Biol. Chem. 266:19053-19055(1991) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 46-62.
  2. "Sequence analysis of 203 kilobases from Saccharomyces cerevisiae chromosome VII."
    Rieger M., Brueckner M., Schaefer M., Mueller-Auer S.
    Yeast 13:1077-1090(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  3. "The nucleotide sequence of Saccharomyces cerevisiae chromosome VII."
    Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M., Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J., Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E., Clemente M.L., Coblenz A., Coglievina M., Coissac E.
    , Defoor E., Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B., Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L., Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M., Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M., Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B., Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W., Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A., Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K., Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S., Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L., Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S., Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J., Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M., Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B., Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J., Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M., van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M., Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H., Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M., Zollner A., Kleine K.
    Nature 387:81-84(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  4. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  5. Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  6. "RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo."
    Hemming S.A., Jansma D.B., Macgregor P.F., Goryachev A., Friesen J.D., Edwards A.M.
    J. Biol. Chem. 275:35506-35511(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: INVOLVEMENT IN TRANSCRIPTION ELONGATION.
  7. "Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae."
    Li S., Smerdon M.J.
    EMBO J. 21:5921-5929(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION IN DNA REPAIR.
  8. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  9. "A multidimensional chromatography technology for in-depth phosphoproteome analysis."
    Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.
    Mol. Cell. Proteomics 7:1389-1396(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-40, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  10. "RNA polymerase II/TFIIF structure and conserved organization of the initiation complex."
    Chung W.H., Craighead J.L., Chang W.H., Ezeokonkwo C., Bareket-Samish A., Kornberg R.D., Asturias F.J.
    Mol. Cell 12:1003-1013(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: ELECTRON MICROSCOPY OF THE RNA POL II/TFIIF COMPLEX.
  11. "Structural basis of transcription: RNA polymerase II at 2.8 A resolution."
    Cramer P., Bushnell D.A., Kornberg R.D.
    Science 292:1863-1876(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  12. "Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution."
    Gnatt A.L., Cramer P., Fu J., Bushnell D.A., Kornberg R.D.
    Science 292:1876-1882(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  13. "Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution."
    Bushnell D.A., Cramer P., Kornberg R.D.
    Proc. Natl. Acad. Sci. U.S.A. 99:1218-1222(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX IN COMPLEX WITH ALPHA-AMANITIN.
  14. "Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage."
    Kettenberger H., Armache K.J., Cramer P.
    Cell 114:347-357(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH DST1.
  15. "Architecture of initiation-competent 12-subunit RNA polymerase II."
    Armache K.J., Kettenberger H., Cramer P.
    Proc. Natl. Acad. Sci. U.S.A. 100:6964-6968(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.2 ANGSTROMS) OF THE RNA POL II COMPLEX.
  16. "Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription."
    Bushnell D.A., Kornberg R.D.
    Proc. Natl. Acad. Sci. U.S.A. 100:6969-6973(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.1 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  17. "Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center."
    Westover K.D., Bushnell D.A., Kornberg R.D.
    Cell 119:481-489(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  18. "Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS."
    Kettenberger H., Armache K.J., Cramer P.
    Mol. Cell 16:955-965(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS).
  19. "Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms."
    Bushnell D.A., Westover K.D., Davis R.E., Kornberg R.D.
    Science 303:983-988(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
  20. "Structures of complete RNA polymerase II and its subcomplex, Rpb4/7."
    Armache K.J., Mitterweger S., Meinhart A., Cramer P.
    J. Biol. Chem. 280:7131-7134(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX.
  21. "Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs."
    Kettenberger H., Eisenfuhr A., Brueckner F., Theis M., Famulok M., Cramer P.
    Nat. Struct. Mol. Biol. 13:44-48(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH INHIBITING NON-CODING RNA.
  22. "Phasing RNA polymerase II using intrinsically bound Zn atoms: an updated structural model."
    Meyer P.A., Ye P., Zhang M., Suh M.H., Fu J.
    Structure 14:973-982(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.15 ANGSTROMS) OF THE RNA POL II COMPLEX.

Entry informationi

Entry nameiRPB9_YEAST
AccessioniPrimary (citable) accession number: P27999
Secondary accession number(s): D6VU72
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: August 1, 1992
Last modified: November 26, 2014
This is version 161 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 2440 molecules/cell in log phase SD medium.1 Publication

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  4. Yeast chromosome VII
    Yeast (Saccharomyces cerevisiae) chromosome VII: entries and gene names

External Data

Dasty 3