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Protein

IMPACT family member YigZ

Gene

yigZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11484-MONOMER.
ECOL316407:JW5577-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
IMPACT family member YigZ
Gene namesi
Name:yigZ
Ordered Locus Names:b3848, JW5577
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11484. yigZ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002076591 – 204IMPACT family member YigZAdd BLAST204

Proteomic databases

PaxDbiP27862.
PRIDEiP27862.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi4261837. 3 interactors.
DIPiDIP-12487N.
IntActiP27862. 3 interactors.
MINTiMINT-1251693.
STRINGi511145.b3848.

Structurei

Secondary structure

1204
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 9Combined sources6
Beta strandi11 – 17Combined sources7
Beta strandi20 – 28Combined sources9
Helixi31 – 45Combined sources15
Beta strandi54 – 57Combined sources4
Beta strandi62 – 64Combined sources3
Beta strandi68 – 70Combined sources3
Beta strandi78 – 80Combined sources3
Helixi81 – 90Combined sources10
Beta strandi94 – 98Combined sources5
Helixi110 – 125Combined sources16
Beta strandi130 – 133Combined sources4
Beta strandi137 – 143Combined sources7
Turni145 – 147Combined sources3
Helixi148 – 157Combined sources10
Beta strandi161 – 177Combined sources17
Helixi182 – 192Combined sources11
Turni193 – 195Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VI7X-ray2.80A1-204[»]
ProteinModelPortaliP27862.
SMRiP27862.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP27862.

Family & Domainsi

Sequence similaritiesi

Belongs to the IMPACT family.Curated

Phylogenomic databases

eggNOGiENOG4108ZK7. Bacteria.
COG1739. LUCA.
HOGENOMiHOG000075267.
InParanoidiP27862.
OMAiDHQRAGK.
PhylomeDBiP27862.

Family and domain databases

Gene3Di3.30.230.30. 1 hit.
3.30.70.240. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR023582. Impact.
IPR015796. Impact_bac/arc.
IPR001498. Impact_N.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR015269. UPF0029_Impact_C.
IPR020569. UPF0029_Impact_CS.
[Graphical view]
PANTHERiPTHR16301. PTHR16301. 1 hit.
PfamiPF09186. DUF1949. 1 hit.
PF01205. UPF0029. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
SSF54980. SSF54980. 1 hit.
TIGRFAMsiTIGR00257. IMPACT_YIGZ. 1 hit.
PROSITEiPS00910. UPF0029. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P27862-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESWLIPAAP VTVVEEIKKS RFITMLAHTD GVEAAKAFVE SVRAEHPDAR
60 70 80 90 100
HHCVAWVAGA PDDSQQLGFS DDGEPAGTAG KPMLAQLMGS GVGEITAVVV
110 120 130 140 150
RYYGGILLGT GGLVKAYGGG VNQALRQLTT QRKTPLTEYT LQCEYHQLTG
160 170 180 190 200
IEALLGQCDG KIINSDYQAF VLLRVALPAA KVAEFSAKLA DFSRGSLQLL

AIEE
Length:204
Mass (Da):21,757
Last modified:July 11, 2001 - v2
Checksum:i97E48163FE899DBE
GO

Sequence cautioni

The sequence AAA67645 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence CAA38501 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti125L → V in CAA38501 (PubMed:2243799).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X54687 Genomic DNA. Translation: CAA38501.1. Different initiation.
M87049 Genomic DNA. Translation: AAA67645.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76851.2.
AP009048 Genomic DNA. Translation: BAE77455.1.
PIRiS30739.
RefSeqiNP_418290.4. NC_000913.3.
WP_001308167.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76851; AAC76851; b3848.
BAE77455; BAE77455; BAE77455.
GeneIDi948334.
KEGGiecj:JW5577.
eco:b3848.
PATRICi32123193. VBIEscCol129921_3962.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X54687 Genomic DNA. Translation: CAA38501.1. Different initiation.
M87049 Genomic DNA. Translation: AAA67645.1. Different initiation.
U00096 Genomic DNA. Translation: AAC76851.2.
AP009048 Genomic DNA. Translation: BAE77455.1.
PIRiS30739.
RefSeqiNP_418290.4. NC_000913.3.
WP_001308167.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VI7X-ray2.80A1-204[»]
ProteinModelPortaliP27862.
SMRiP27862.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261837. 3 interactors.
DIPiDIP-12487N.
IntActiP27862. 3 interactors.
MINTiMINT-1251693.
STRINGi511145.b3848.

Proteomic databases

PaxDbiP27862.
PRIDEiP27862.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76851; AAC76851; b3848.
BAE77455; BAE77455; BAE77455.
GeneIDi948334.
KEGGiecj:JW5577.
eco:b3848.
PATRICi32123193. VBIEscCol129921_3962.

Organism-specific databases

EchoBASEiEB1447.
EcoGeneiEG11484. yigZ.

Phylogenomic databases

eggNOGiENOG4108ZK7. Bacteria.
COG1739. LUCA.
HOGENOMiHOG000075267.
InParanoidiP27862.
OMAiDHQRAGK.
PhylomeDBiP27862.

Enzyme and pathway databases

BioCyciEcoCyc:EG11484-MONOMER.
ECOL316407:JW5577-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP27862.
PROiP27862.

Family and domain databases

Gene3Di3.30.230.30. 1 hit.
3.30.70.240. 1 hit.
InterProiIPR009022. EFG_III-V.
IPR000640. EFG_V.
IPR023582. Impact.
IPR015796. Impact_bac/arc.
IPR001498. Impact_N.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR015269. UPF0029_Impact_C.
IPR020569. UPF0029_Impact_CS.
[Graphical view]
PANTHERiPTHR16301. PTHR16301. 1 hit.
PfamiPF09186. DUF1949. 1 hit.
PF01205. UPF0029. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
SSF54980. SSF54980. 1 hit.
TIGRFAMsiTIGR00257. IMPACT_YIGZ. 1 hit.
PROSITEiPS00910. UPF0029. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYIGZ_ECOLI
AccessioniPrimary (citable) accession number: P27862
Secondary accession number(s): Q2M8F1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 1, 1992
Last sequence update: July 11, 2001
Last modified: November 2, 2016
This is version 137 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.